PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027098304.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 270aa MW: 29886.5 Da PI: 6.9036 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.9 | 1.8e-08 | 156 | 203 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq XP_027098304.1 156 SHSLAERMRREKINQKLRCLQDLVPGC----YKSMGMAVMLDVIINYVRSLQ 203 8*************************8....355888889999999988887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence |
MMNSNMDVVN SLTEIDSFNP NVQELLSLTT HVGFSDHNRQ QSQIPFSFSN DTSHNPNASH 60 HHHLQVPLDF ESAAQFFPQG GVPISHGCND SNSLSEPDYL ANSSSRGSAS AGIPVNKPKG 120 TYNYGEKKRK RSNGKETEKP KEVVHVRAKR GQATDSHSLA ERMRREKINQ KLRCLQDLVP 180 GCYKSMGMAV MLDVIINYVR SLQNQIDFLS MKLSAASLFY DFNSLDMDAV PPTQACANFP 240 GPPGCEAQGL EKMVGEGYGE LPQFHTSWPL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 127 | 132 | KKRKRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25330.1 | 4e-57 | bHLH family protein |