PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027098137.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 428aa MW: 46245.3 Da PI: 8.5799 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.7 | 8.4e-13 | 76 | 100 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ XP_027098137.1 76 EPDCQYYLRTGTCKFGASCKFHHPR 100 789********************96 PP | |||||||
2 | zf-CCCH | 38.3 | 2.3e-12 | 122 | 146 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ XP_027098137.1 122 EKECSYYLKTGQCKFGNTCKFHHPQ 146 689********************97 PP | |||||||
3 | zf-CCCH | 36 | 1.2e-11 | 274 | 297 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++r+G Ck+G++C+F+H+p XP_027098137.1 274 LECQYYMRYGDCKFGPSCRFHHPP 297 58********************97 PP | |||||||
4 | zf-CCCH | 26.7 | 9.7e-09 | 322 | 343 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+f+++ G Ck+G +CkF H++ XP_027098137.1 322 CPFYLQKGRCKFGRNCKFDHPM 343 ********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence |
MELYGQSNAR KGLQQNRSRE WAPAAREAES MGRLGLWDGE AYPERPGMLE CAYYMRTGVG 60 GSVSLGAADY PERVGEPDCQ YYLRTGTCKF GASCKFHHPR NAGGSLISVS LNIYGYPLRL 120 GEKECSYYLK TGQCKFGNTC KFHHPQPAGI SLPATAHPFY PTVQSPSALS EQYCCASTNY 180 RVSRPPILTG SYVPGAYGPF LLHTGVVPVP NWGPYTGPIT PGFSPGTQAS VGATSLYGVS 240 QLNSSATAFA GTYPTLLSDS NQKKQKFPER PGQLECQYYM RYGDCKFGPS CRFHHPPNLV 300 VAKAYSALSP LGLPLRPGIQ SCPFYLQKGR CKFGRNCKFD HPMGTVEYSP SASSLTDVPV 360 TPYMLCSSTA MEGQAAEFVG SKLDLQITRD RPHGSGLSGS VGLAFSRTAP FLLSSIQISD 420 QGSGPNAD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-150 | C3H family protein |