PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098136.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 359aa MW: 40012.1 Da PI: 4.8413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.8e-11	180	225	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f L ++P + kK++K ++L +++Y+k+Lq XP_027098136.1 180 HIIAERKRREQLSQQFVALSAIVPGL-----KKMDKTSVLGDTIKYLKHLQ 225 899*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEDTAEASWF SELEGMEDPF VSDQYDITDF FDEELSAALG EEQYFPSSLS PQCNSLSSGQ 60 IPRNNSTTSL CGSSTMEPPQ NVVERPSKHH KANNYLNNSS TLQATNSCHE QVICTFGNSN 120 VVPERNRQQL IMGTNTGDDL VSEALISRAS FTSLVEAVKG VHTTKKTSGR TRPPSQTYDH 180 IIAERKRREQ LSQQFVALSA IVPGLKKMDK TSVLGDTIKY LKHLQQREKE LEEQATMQTM 240 ESLVLVKKSQ LLLEDEGEPS DEQGGCCNEQ PLPEIEAKMC DKHVLVRILC EKHRGVLVEI 300 LSEMDKLNLD VINTNVAPFG SLALDITIIT EMKREFNLSM KELVNSLASG LRRATLQKA

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEDTAEASWF SELEGMEDPF VSDQYDITDF FDEELSAALG EEQYFPSSLS PQCNSLSSGQ  60
IPRNNSTTSL CGSSTMEPPQ NVVERPSKHH KANNYLNNSS TLQATNSCHE QVICTFGNSN  120
VVPERNRQQL IMGTNTGDDL VSEALISRAS FTSLVEAVKG VHTTKKTSGR TRPPSQTYDH  180
IIAERKRREQ LSQQFVALSA IVPGLKKMDK TSVLGDTIKY LKHLQQREKE LEEQATMQTM  240
ESLVLVKKSQ LLLEDEGEPS DEQGGCCNEQ PLPEIEAKMC DKHVLVRILC EKHRGVLVEI  300
LSEMDKLNLD VINTNVAPFG SLALDITIIT EMKREFNLSM KELVNSLASG LRRATLQKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	189	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-45	bHLH family protein