PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098128.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 431aa MW: 46516.6 Da PI: 8.5799

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098128.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.6	8.4e-13	79	103	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ XP_027098128.1 79 EPDCQYYLRTGTCKFGASCKFHHPR 103 789********************96 PP
2	zf-CCCH	38.3	2.3e-12	125	149	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ XP_027098128.1 125 EKECSYYLKTGQCKFGNTCKFHHPQ 149 689********************97 PP
3	zf-CCCH	36	1.2e-11	277	300	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++r+G Ck+G++C+F+H+p XP_027098128.1 277 LECQYYMRYGDCKFGPSCRFHHPP 300 58********************97 PP
4	zf-CCCH	26.7	9.8e-09	325	346	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+f+++ G Ck+G +CkF H++ XP_027098128.1 325 CPFYLQKGRCKFGRNCKFDHPM 346 ********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MELYGQSNAR KGLQQNRSRE WAPAAREAGL TESMGRLGLW DGEAYPERPG MLECAYYMRT 60 GVGGSVSLGA ADYPERVGEP DCQYYLRTGT CKFGASCKFH HPRNAGGSLI SVSLNIYGYP 120 LRLGEKECSY YLKTGQCKFG NTCKFHHPQP AGISLPATAH PFYPTVQSPS ALSEQYCCAS 180 TNYRVSRPPI LTGSYVPGAY GPFLLHTGVV PVPNWGPYTG PITPGFSPGT QASVGATSLY 240 GVSQLNSSAT AFAGTYPTLL SDSNQKKQKF PERPGQLECQ YYMRYGDCKF GPSCRFHHPP 300 NLVVAKAYSA LSPLGLPLRP GIQSCPFYLQ KGRCKFGRNC KFDHPMGTVE YSPSASSLTD 360 VPVTPYMLCS STAMEGQAAE FVGSKLDLQI TRDRPHGSGL SGSVGLAFSR TAPFLLSSIQ 420 ISDQGSGPNA D

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MELYGQSNAR KGLQQNRSRE WAPAAREAGL TESMGRLGLW DGEAYPERPG MLECAYYMRT  60
GVGGSVSLGA ADYPERVGEP DCQYYLRTGT CKFGASCKFH HPRNAGGSLI SVSLNIYGYP  120
LRLGEKECSY YLKTGQCKFG NTCKFHHPQP AGISLPATAH PFYPTVQSPS ALSEQYCCAS  180
TNYRVSRPPI LTGSYVPGAY GPFLLHTGVV PVPNWGPYTG PITPGFSPGT QASVGATSLY  240
GVSQLNSSAT AFAGTYPTLL SDSNQKKQKF PERPGQLECQ YYMRYGDCKF GPSCRFHHPP  300
NLVVAKAYSA LSPLGLPLRP GIQSCPFYLQ KGRCKFGRNC KFDHPMGTVE YSPSASSLTD  360
VPVTPYMLCS STAMEGQAAE FVGSKLDLQI TRDRPHGSGL SGSVGLAFSR TAPFLLSSIQ  420
ISDQGSGPNA D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-154	C3H family protein