PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027098114.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 449aa MW: 48551.9 Da PI: 8.72 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33 | 1e-10 | 52 | 75 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG C yG++C+++H++ XP_027098114.1 52 LECAYYMRTGVCGYGAKCRYNHPR 75 58********************96 PP | |||||||
2 | zf-CCCH | 39.6 | 8.9e-13 | 97 | 121 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ XP_027098114.1 97 EPDCQYYLRTGTCKFGASCKFHHPR 121 789********************96 PP | |||||||
3 | zf-CCCH | 38.2 | 2.4e-12 | 143 | 167 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ XP_027098114.1 143 EKECSYYLKTGQCKFGNTCKFHHPQ 167 689********************97 PP | |||||||
4 | zf-CCCH | 35.9 | 1.2e-11 | 295 | 318 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++r+G Ck+G++C+F+H+p XP_027098114.1 295 LECQYYMRYGDCKFGPSCRFHHPP 318 58********************97 PP | |||||||
5 | zf-CCCH | 26.6 | 1e-08 | 343 | 364 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+f+++ G Ck+G +CkF H++ XP_027098114.1 343 CPFYLQKGRCKFGRNCKFDHPM 364 ********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence |
MELYGQSNAR KGLQQNRSRE WAPAAREAGL TESMGRLGLW DGEAYPERPG MLECAYYMRT 60 GVCGYGAKCR YNHPRDRASV GGSVSLGAAD YPERVGEPDC QYYLRTGTCK FGASCKFHHP 120 RNAGGSLISV SLNIYGYPLR LGEKECSYYL KTGQCKFGNT CKFHHPQPAG ISLPATAHPF 180 YPTVQSPSAL SEQYCCASTN YRVSRPPILT GSYVPGAYGP FLLHTGVVPV PNWGPYTGPI 240 TPGFSPGTQA SVGATSLYGV SQLNSSATAF AGTYPTLLSD SNQKKQKFPE RPGQLECQYY 300 MRYGDCKFGP SCRFHHPPNL VVAKAYSALS PLGLPLRPGI QSCPFYLQKG RCKFGRNCKF 360 DHPMGTVEYS PSASSLTDVP VTPYMLCSST AMEGQAAEFV GSKLDLQITR DRPHGSGLSG 420 SVGLAFSRTA PFLLSSIQIS DQGSGPNAD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-171 | C3H family protein |