PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027098112.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 502aa    MW: 56675.5 Da    PI: 6.3288
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027098112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.84.3e-1071315001374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL++cAeav+ +d++ a++l+a l+  a   g+++qR+a++f+++L++rl   +  + +  + + +++   s e+ +al l +e++P ++f+
  XP_027098112.1 131 LVQLLVACAEAVAYRDKRHASTLIADLQADALVFGTSFQRVASCFVQGLSHRLELvQPRGAVGDIGAIPKTIAFSLEKEKALGLVYEICPHVQFG 225
                     689**************************************************99444556666666666666799999999************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     h +aN  Il+a+ege+ +H++D++++    +G QW +L+  La R++ p +lRiTgvg+     +++l  +g+ L ++A++lgv+ ef v v+++
  XP_027098112.1 226 HYVANASILQAFEGESSIHVVDLGMTlglrHGYQWRSLIFNLAIRAGRPCRLRITGVGN----CADRLLVIGDELGEYAQNLGVKYEFAV-VESN 315
                     **********************97652222889**************************....**************************9.7*** PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     le+l+ e+L++  +E+l++n++l+lh  ++es    +   +vL+++++l Pk +++veqe++hn++ Fl rf+eal+yysa+fdsl+a lp+ + 
  XP_027098112.1 316 LENLRREDLKILDDEVLVINSILELHCAVKESRGALN---SVLQMLNDLTPKAFILVEQESSHNGPFFLGRFMEALYYYSAIFDSLDAMLPKYDT 407
                     ****************************988877766...8****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+k+E++++g+ei+n+v+ceg +r+erhe+l +Wr+r+++aGF+p+p++  + +qa++ l+ v+  +gy++ ee+g+lvlgWk++p++++S+W+
  XP_027098112.1 408 RRSKMEQFYFGEEIKNIVSCEGPARVERHERLDQWRRRMGRAGFQPAPVK--MLTQARRWLESVQaCEGYTISEEKGCLVLGWKSKPIIAASCWK 500
                     ************************************************96..799***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    
MEPKFFCYDK SNASNSLDLN ASSASCYILS FQDSSGLDET RNSKRLKQLD NFNQYFGNEY  60
HHDCSRDVVY EGSINGRTEE KKCSTRPLFR DHIWAYAQKY MAAAAVEEAD GAYDKEEHVI  120
KEEGKEDGMR LVQLLVACAE AVAYRDKRHA STLIADLQAD ALVFGTSFQR VASCFVQGLS  180
HRLELVQPRG AVGDIGAIPK TIAFSLEKEK ALGLVYEICP HVQFGHYVAN ASILQAFEGE  240
SSIHVVDLGM TLGLRHGYQW RSLIFNLAIR AGRPCRLRIT GVGNCADRLL VIGDELGEYA  300
QNLGVKYEFA VVESNLENLR REDLKILDDE VLVINSILEL HCAVKESRGA LNSVLQMLND  360
LTPKAFILVE QESSHNGPFF LGRFMEALYY YSAIFDSLDA MLPKYDTRRS KMEQFYFGEE  420
IKNIVSCEGP ARVERHERLD QWRRRMGRAG FQPAPVKMLT QARRWLESVQ ACEGYTISEE  480
KGCLVLGWKS KPIIAASCWK CS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-83GRAS family protein