PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027098073.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 263aa    MW: 30303 Da    PI: 4.8894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027098073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
   XP_027098073.1 14 RGPWTVEEDNKLTNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding59.67e-1967110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+WT+ E++ +++++ +lG++ W++Ia++++ gRt++++k++w++
   XP_027098073.1  67 RGAWTEAEEDMIIELHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                      89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MGRQPCCDKV GLKRGPWTVE EDNKLTNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY  60
LRPDLKRGAW TEAEEDMIIE LHSRLGNRWS KIAAHFPGRT DNEIKNHWNT KIKKKLKFLG  120
LDPLTHKPID QPENCVSKSE EFRENSSLGE QEVLKLELQE TLQSEDFQTQ QNEKNLNTNL  180
HEQQSTGTSS SSLDEEKPNL ASMFNETREF PETGSIEIQN SEPLDAISYI VGTNDIQLED  240
PFQNWIDSPL PWDVFSSLGE NFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-87MYB family protein