PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098067.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 400aa MW: 44262.8 Da PI: 5.6252

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.8	1.7e-06	22	65	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 r+C+ +++ + +C+ ++ lC C + H+ Ht++ XP_027098067.1 22 RVCDFCGDAAALVYCRADSAKLCLACDRQVHSTnplftkHTRCL 65 79****99*******************7689999999875 PP
2	zf-B_box	25.3	3.1e-08	66	108	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +++ ++++fC + ++ lC++C +H + H+++p XP_027098067.1 66 LCDACDSTPATIFCSTHSSVLCQNCDWDTHTYssfsavHDRRP 108 6*****************************7788888998877 PP
3	CCT	58.1	3.2e-20	356	398	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R a++RY+eK+ktR+F+K+irYe+RK++AesR R++GrF+k XP_027098067.1 356 RGSAISRYREKKKTRRFDKHIRYETRKVRAESRTRIRGRFAKM 398 6789*************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MVLMKSQKPE ELESDGAVVG RRVCDFCGDA AALVYCRADS AKLCLACDRQ VHSTNPLFTK 60 HTRCLLCDAC DSTPATIFCS THSSVLCQNC DWDTHTYSSF SAVHDRRPLE GFCGCPSVTE 120 LLGILGFEEL GKKSLLVSDA PASAALKEAS NTNSSRHDVD DAESVYELSD LLVWETPSIV 180 CLDDLIMSSD SSSGRSLQAM GVPPLPKNRN ATCGQHREEM LSQLRQMSKL EPNINCGQAD 240 VEPLVGFQLP VPEQNLQFGQ KDESLDHNSE PVLGSSYEAS AFQWGSEKVE DEVPDISALL 300 GENIELNHIV PDKDSGVGDS PGPLRGSHEE QMHPPAAETL QTLPRPAIRE LNRQERGSAI 360 SRYREKKKTR RFDKHIRYET RKVRAESRTR IRGRFAKMAR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MVLMKSQKPE ELESDGAVVG RRVCDFCGDA AALVYCRADS AKLCLACDRQ VHSTNPLFTK  60
HTRCLLCDAC DSTPATIFCS THSSVLCQNC DWDTHTYSSF SAVHDRRPLE GFCGCPSVTE  120
LLGILGFEEL GKKSLLVSDA PASAALKEAS NTNSSRHDVD DAESVYELSD LLVWETPSIV  180
CLDDLIMSSD SSSGRSLQAM GVPPLPKNRN ATCGQHREEM LSQLRQMSKL EPNINCGQAD  240
VEPLVGFQLP VPEQNLQFGQ KDESLDHNSE PVLGSSYEAS AFQWGSEKVE DEVPDISALL  300
GENIELNHIV PDKDSGVGDS PGPLRGSHEE QMHPPAAETL QTLPRPAIRE LNRQERGSAI  360
SRYREKKKTR RFDKHIRYET RKVRAESRTR IRGRFAKMAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	2e-83	CO-like family protein