PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098032.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 549aa MW: 58544.1 Da PI: 5.3645

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.8e-09	369	417	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_027098032.1 369 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 417 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MDMAEKDNIG PEKRNEDLLN YQSSNMPSEW QLSGNSLSNA SMGLISSGNL EQPSSSNAAV 60 IDSLCPTMWE QSLSAQNLGF NDNNVQHNTS TSNALGNRAG GLGPLRAGLD SLVGMGMGWT 120 PPNAMLKGGM FLPGAPGYLP QTLAHFPADS GFIERAARYS CFSGGNFSEL INPFNASDSM 180 NPYAGGLASM LGSQEALMGN GLNPTSEMQP PKNEMNMTES SKHVSFPTEC GPSEGIPLKN 240 EKKSESLVRS HDEAKGGVGA SGNDSDEAEF SGRGGQEELD AADGESTPKG IGSKKRKRCG 300 QDSEHNQKKG SSQQAAEVPN DGTEVQKKGD QNPTSSKPGG KNGKQGPQAS GSPKEEYIHV 360 RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV 420 EFLSMKLATV NPRLDFNIEG LLAKDVLQTR AGPSSLTFPP DMSMAYPQLH QSQQGMVQAG 480 LHGLGSPSDV LRRSINSPLT TVSGNLKEPS SHVPNVWEDE LHNIVQMGLN SSVPLSSEDI 540 SGIGSPDLT

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MDMAEKDNIG PEKRNEDLLN YQSSNMPSEW QLSGNSLSNA SMGLISSGNL EQPSSSNAAV  60
IDSLCPTMWE QSLSAQNLGF NDNNVQHNTS TSNALGNRAG GLGPLRAGLD SLVGMGMGWT  120
PPNAMLKGGM FLPGAPGYLP QTLAHFPADS GFIERAARYS CFSGGNFSEL INPFNASDSM  180
NPYAGGLASM LGSQEALMGN GLNPTSEMQP PKNEMNMTES SKHVSFPTEC GPSEGIPLKN  240
EKKSESLVRS HDEAKGGVGA SGNDSDEAEF SGRGGQEELD AADGESTPKG IGSKKRKRCG  300
QDSEHNQKKG SSQQAAEVPN DGTEVQKKGD QNPTSSKPGG KNGKQGPQAS GSPKEEYIHV  360
RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV  420
EFLSMKLATV NPRLDFNIEG LLAKDVLQTR AGPSSLTFPP DMSMAYPQLH QSQQGMVQAG  480
LHGLGSPSDV LRRSINSPLT TVSGNLKEPS SHVPNVWEDE LHNIVQMGLN SSVPLSSEDI  540
SGIGSPDLT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	297	PKGIGSKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-121	bHLH family protein