PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027097981.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 280aa    MW: 30793.4 Da    PI: 5.6191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027097981.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.86.8e-079411955
                    HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     f+ Lrel+P++    ++K + a+ L +++eY+++Lq
  XP_027097981.1  9 IFQILRELIPHS----DQKRDTASFLLEVIEYVQYLQ 41
                    599********9....8*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MVGAIIVSIF QILRELIPHS DQKRDTASFL LEVIEYVQYL QEKVQKCEGS YQAWNSEPTK  60
LMPWRNSHWR TQSFVSHPQT MKNGSGSGPL YPGRLEDNNI TVSSTVQPSQ QNPIESDLGR  120
EVTSKTMDQQ TELTNQAMPM PMPLQAAMPV PIQNDGAFSH SQPRPAPDAQ SSDCPITDDM  180
LNHPEGLTIE GGTISISSIY SQGLLNTLTQ ALQTAGVDLS QATVSVQINL GKQANRGLAS  240
GISVTKDHER RSPSGDQLAG QYRDTSNGED FSQAQKRLKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-57bHLH family protein