PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027097746.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23563.1 Da    PI: 8.6897
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027097746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.3e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ie+k  rqvtfskRr g++KKA+ELSvLCd++vav+ifs +gkly+++s
  XP_027097746.1  9 KKIEDKNSRQVTFSKRRSGLMKKAKELSVLCDVDVAVLIFSGRGKLYDFCS 59
                    68***********************************************96 PP
2K-box48.92.8e-171011712999
           K-box  29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + L++  R l   d++ L+l eL qLe+qLe++l + Rs+K++ll+e+i  l + ek+l+eenk L++k++
  XP_027097746.1 101 KLLEKVERDLEEPDVDHLNLSELVQLEEQLEDALIQTRSRKTRLLMESITSLSEVEKMLREENKLLQNKVA 171
                     45677788888899******************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MGRRKVEIKK IEDKNSRQVT FSKRRSGLMK KAKELSVLCD VDVAVLIFSG RGKLYDFCST  60
NSLAKILQRY HNYAEAEDGP ARISGVEKRN PEGRNVVTIR KLLEKVERDL EEPDVDHLNL  120
SELVQLEEQL EDALIQTRSR KTRLLMESIT SLSEVEKMLR EENKLLQNKV AAGTPNEKRN  180
DLILEFGDLT HVGMISGQRQ AMLELL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.21e-39MIKC_MADS family protein