PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027097476.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 318aa MW: 34947.4 Da PI: 6.6071

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027097476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.4	3e-14	134	180	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_027097476.1 134 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 180 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MQQHNSTDAY LAAAGGGRSS GGGGLMFPEV SPILPWTIPQ VHSFNPVHQF RDHDPFLLPP 60 PPSPYGGLFN RRPPPPGLQF AYEGSSSDHL RLISDTCLGQ VVQASSAAPF GLQAELQKMT 120 AQEIMDAKAL AASKSHSEAE RRRRERINNH LAKLRSLLPN TTKTDKASLL AEVIQHVKEL 180 KRQTSLIAES TPVPTEIDEL TVDNASDEDG KLVIRASLCC EDRSDLLPDL IKTLKSLRLR 240 TLKAEITTLG GRVKNVLFIT GEDDTDSDDQ QQQQQQYSIS SIQEALKAVM EKTNGDESGS 300 GNVKRQRTNI NILEHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	24	GGGRSSGGGG
2	16	25	GGGRSSGGGG
3	140	145	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-80	bHLH family protein