PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027097475.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 357aa MW: 39285 Da PI: 5.9669

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027097475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.1	3.6e-14	173	219	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_027097475.1 173 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 219 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MCDNNIEDQQ TDHSSPQTIT NSAIQGFQEK LHLQPSGLEM QQHNSTDAYL AAAGGGRSSG 60 GGGLMFPEVS PILPWTIPQV HSFNPVHQFR DHDPFLLPPP PSPYGGLFNR RPPPPGLQFA 120 YEGSSSDHLR LISDTCLGQV VQASSAAPFG LQAELQKMTA QEIMDAKALA ASKSHSEAER 180 RRRERINNHL AKLRSLLPNT TKTDKASLLA EVIQHVKELK RQTSLIAEST PVPTEIDELT 240 VDNASDEDGK LVIRASLCCE DRSDLLPDLI KTLKSLRLRT LKAEITTLGG RVKNVLFITG 300 EDDTDSDDQQ QQQQQYSISS IQEALKAVME KTNGDESGSG NVKRQRTNIN ILEHRSL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MCDNNIEDQQ TDHSSPQTIT NSAIQGFQEK LHLQPSGLEM QQHNSTDAYL AAAGGGRSSG  60
GGGLMFPEVS PILPWTIPQV HSFNPVHQFR DHDPFLLPPP PSPYGGLFNR RPPPPGLQFA  120
YEGSSSDHLR LISDTCLGQV VQASSAAPFG LQAELQKMTA QEIMDAKALA ASKSHSEAER  180
RRRERINNHL AKLRSLLPNT TKTDKASLLA EVIQHVKELK RQTSLIAEST PVPTEIDELT  240
VDNASDEDGK LVIRASLCCE DRSDLLPDLI KTLKSLRLRT LKAEITTLGG RVKNVLFITG  300
EDDTDSDDQQ QQQQQYSISS IQEALKAVME KTNGDESGSG NVKRQRTNIN ILEHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	63	GGGRSSGGGG
2	55	64	GGGRSSGGGG
3	179	184	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	8e-80	bHLH family protein