PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027097390.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 953aa MW: 106594 Da PI: 5.818

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027097390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	171.8	1e-53	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwlk+ e++ iL+n+e+ +t++++++p sgsl+L+n++++r+frkDG+sw++k+dg+tv E+he+LKvg+ve+l+cyYah+e+np+fq XP_027097390.1 12 VREaQSRWLKPAEVLFILQNHENQMITNQPPQKPGSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPNFQ 106 45669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhyle 116 rr+yw+L+ ++e+ivlvhy++ XP_027097390.1 107 RRSYWMLNPAYEHIVLVHYRD 127 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence
MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNQ PPQKPGSGSL FLFNKRVLRF 60 FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI 120 VLVHYRDISE LQARNNAGTI SQFSPISSST FSQSPISGNT QQLGSSPLLG ESYEQIHNLS 180 SPGSVEFSSS VVIKSNGMNY SQDIERTEEV TSSSSHDISQ ALRRLEEQLS LNDDRLEEIG 240 SCYTQNENSH DSEKSTQGQT PSVPGQGYEI EHQQQSLGHE GWTEMLDGCN SSEDVLAQGV 300 LLDEWTKELV AEQDGYTWLD YGGTNAQDVS LPVAKEVQNL AYPAYSAAVK TYMTNPDNYT 360 TLFDHNQIGI SLEEDLGLTI AQKQKFTIQE ISPEWAYASE TTKVFIIGSF LCDPLDAAWT 420 CMFGDIEVPV QIIQEGVICC HAPHHSPGKV TICVTSGNRE SCSEVREFEY RVKPTVCSHC 480 SQPQREASRS PEEMLLLVRF VQLLLSNPSM QKGDTSESGV DLLGKSRADE DSWGQVIEAL 540 LAGTSTLSIT TDWLLEELVK DKLQNWLSSK SQDDNMPCCS LSKKEQGVIH IISGLGFEWA 600 LHPFLKSGVN VNFRDINGWT ALHWAARFGR EKMVAALIAA GASAGAVTDP NSKDPTGKTA 660 ASVAATWGHK GLAGYLSEVA LTSHLFSLTL EESELSKGSA DVEAERTLIN IPKTSPTTNE 720 DQLSLKDSLA AARNAAQAAA RIQSAFRAHS FRRRQQKEFD ISAASSTSRD EYGILLSDIP 780 ELSAASKFAF RNSRDYNSAA LSIQKKYRGW KGRKDFLAFR QKVVKIQAHV RGYQVRKNYR 840 VCWAVGILEK VVLRWRRRGV GLRGFRLETD AIDESEDEDI LRVFRKQKVD ATIDEAVSRV 900 LSMVESPGAR QQYRRILEKY RQAKAELDGA EREISSTSYD VSSMENDDIY QFV

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence

MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNQ PPQKPGSGSL FLFNKRVLRF  60
FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI  120
VLVHYRDISE LQARNNAGTI SQFSPISSST FSQSPISGNT QQLGSSPLLG ESYEQIHNLS  180
SPGSVEFSSS VVIKSNGMNY SQDIERTEEV TSSSSHDISQ ALRRLEEQLS LNDDRLEEIG  240
SCYTQNENSH DSEKSTQGQT PSVPGQGYEI EHQQQSLGHE GWTEMLDGCN SSEDVLAQGV  300
LLDEWTKELV AEQDGYTWLD YGGTNAQDVS LPVAKEVQNL AYPAYSAAVK TYMTNPDNYT  360
TLFDHNQIGI SLEEDLGLTI AQKQKFTIQE ISPEWAYASE TTKVFIIGSF LCDPLDAAWT  420
CMFGDIEVPV QIIQEGVICC HAPHHSPGKV TICVTSGNRE SCSEVREFEY RVKPTVCSHC  480
SQPQREASRS PEEMLLLVRF VQLLLSNPSM QKGDTSESGV DLLGKSRADE DSWGQVIEAL  540
LAGTSTLSIT TDWLLEELVK DKLQNWLSSK SQDDNMPCCS LSKKEQGVIH IISGLGFEWA  600
LHPFLKSGVN VNFRDINGWT ALHWAARFGR EKMVAALIAA GASAGAVTDP NSKDPTGKTA  660
ASVAATWGHK GLAGYLSEVA LTSHLFSLTL EESELSKGSA DVEAERTLIN IPKTSPTTNE  720
DQLSLKDSLA AARNAAQAAA RIQSAFRAHS FRRRQQKEFD ISAASSTSRD EYGILLSDIP  780
ELSAASKFAF RNSRDYNSAA LSIQKKYRGW KGRKDFLAFR QKVVKIQAHV RGYQVRKNYR  840
VCWAVGILEK VVLRWRRRGV GLRGFRLETD AIDESEDEDI LRVFRKQKVD ATIDEAVSRV  900
LSMVESPGAR QQYRRILEKY RQAKAELDGA EREISSTSYD VSSMENDDIY QFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein