PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027097389.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 961aa MW: 107620 Da PI: 5.9633

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027097389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	171.8	1e-53	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwlk+ e++ iL+n+e+ +t++++++p sgsl+L+n++++r+frkDG+sw++k+dg+tv E+he+LKvg+ve+l+cyYah+e+np+fq XP_027097389.1 12 VREaQSRWLKPAEVLFILQNHENQMITNQPPQKPGSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPNFQ 106 45669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhyle 116 rr+yw+L+ ++e+ivlvhy++ XP_027097389.1 107 RRSYWMLNPAYEHIVLVHYRD 127 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence
MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNQ PPQKPGSGSL FLFNKRVLRF 60 FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI 120 VLVHYRDISE ARNNAGTISQ FSPISSSTFS QSPISGNTQQ LGSSPLLGES YEQIHNLSSP 180 GSVEFSSSVV IKSNGMNYSQ DIERTEEVTS SSSHDISQAL RRLEEQLSLN DDRLEEIGSC 240 YTQNENSHDS EKSTQGQTPS VPGQGYEIEH QQQSLGHEGW TEMLDGCNSS EDVLAQVRHV 300 DKFDRNGVLL DEWTKELVAE QDGYTWLDYG GTNAQDVSLP VAKEVQNLAY PAYSAAVKTY 360 MTNPDNYTTL FDHNQIGISL EEDLGLTIAQ KQKFTIQEIS PEWAYASETT KVFIIGSFLC 420 DPLDAAWTCM FGDIEVPVQI IQEGVICCHA PHHSPGKVTI CVTSGNRESC SEVREFEYRV 480 KPTVCSHCSQ PQREASRSPE EMLLLVRFVQ LLLSNPSMQK GDTSESGVDL LGKSRADEDS 540 WGQVIEALLA GTSTLSITTD WLLEELVKDK LQNWLSSKSQ DDNMPCCSLS KKEQGVIHII 600 SGLGFEWALH PFLKSGVNVN FRDINGWTAL HWAARFGREK MVAALIAAGA SAGAVTDPNS 660 KDPTGKTAAS VAATWGHKGL AGYLSEVALT SHLFSLTLEE SELSKGSADV EAERTLINIP 720 KTSPTTNEDQ LSLKDSLAAA RNAAQAAARI QSAFRAHSFR RRQQKEFDIS AASSTSRDEY 780 GILLSDIPEL SAASKFAFRN SRDYNSAALS IQKKYRGWKG RKDFLAFRQK VVKIQAHVRG 840 YQVRKNYRVC WAVGILEKVV LRWRRRGVGL RGFRLETDAI DESEDEDILR VFRKQKVDAT 900 IDEAVSRVLS MVESPGARQQ YRRILEKYRQ AKAELDGAER EISSTSYDVS SMENDDIYQF 960 V

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence

MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNQ PPQKPGSGSL FLFNKRVLRF  60
FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI  120
VLVHYRDISE ARNNAGTISQ FSPISSSTFS QSPISGNTQQ LGSSPLLGES YEQIHNLSSP  180
GSVEFSSSVV IKSNGMNYSQ DIERTEEVTS SSSHDISQAL RRLEEQLSLN DDRLEEIGSC  240
YTQNENSHDS EKSTQGQTPS VPGQGYEIEH QQQSLGHEGW TEMLDGCNSS EDVLAQVRHV  300
DKFDRNGVLL DEWTKELVAE QDGYTWLDYG GTNAQDVSLP VAKEVQNLAY PAYSAAVKTY  360
MTNPDNYTTL FDHNQIGISL EEDLGLTIAQ KQKFTIQEIS PEWAYASETT KVFIIGSFLC  420
DPLDAAWTCM FGDIEVPVQI IQEGVICCHA PHHSPGKVTI CVTSGNRESC SEVREFEYRV  480
KPTVCSHCSQ PQREASRSPE EMLLLVRFVQ LLLSNPSMQK GDTSESGVDL LGKSRADEDS  540
WGQVIEALLA GTSTLSITTD WLLEELVKDK LQNWLSSKSQ DDNMPCCSLS KKEQGVIHII  600
SGLGFEWALH PFLKSGVNVN FRDINGWTAL HWAARFGREK MVAALIAAGA SAGAVTDPNS  660
KDPTGKTAAS VAATWGHKGL AGYLSEVALT SHLFSLTLEE SELSKGSADV EAERTLINIP  720
KTSPTTNEDQ LSLKDSLAAA RNAAQAAARI QSAFRAHSFR RRQQKEFDIS AASSTSRDEY  780
GILLSDIPEL SAASKFAFRN SRDYNSAALS IQKKYRGWKG RKDFLAFRQK VVKIQAHVRG  840
YQVRKNYRVC WAVGILEKVV LRWRRRGVGL RGFRLETDAI DESEDEDILR VFRKQKVDAT  900
IDEAVSRVLS MVESPGARQQ YRRILEKYRQ AKAELDGAER EISSTSYDVS SMENDDIYQF  960
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein