PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027097388.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 963aa MW: 107862 Da PI: 5.9633

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027097388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	171.8	1e-53	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwlk+ e++ iL+n+e+ +t++++++p sgsl+L+n++++r+frkDG+sw++k+dg+tv E+he+LKvg+ve+l+cyYah+e+np+fq XP_027097388.1 12 VREaQSRWLKPAEVLFILQNHENQMITNQPPQKPGSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPNFQ 106 45669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhyle 116 rr+yw+L+ ++e+ivlvhy++ XP_027097388.1 107 RRSYWMLNPAYEHIVLVHYRD 127 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence
MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNQ PPQKPGSGSL FLFNKRVLRF 60 FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI 120 VLVHYRDISE LQARNNAGTI SQFSPISSST FSQSPISGNT QQLGSSPLLG ESYEQIHNLS 180 SPGSVEFSSS VVIKSNGMNY SQDIERTEEV TSSSSHDISQ ALRRLEEQLS LNDDRLEEIG 240 SCYTQNENSH DSEKSTQGQT PSVPGQGYEI EHQQQSLGHE GWTEMLDGCN SSEDVLAQVR 300 HVDKFDRNGV LLDEWTKELV AEQDGYTWLD YGGTNAQDVS LPVAKEVQNL AYPAYSAAVK 360 TYMTNPDNYT TLFDHNQIGI SLEEDLGLTI AQKQKFTIQE ISPEWAYASE TTKVFIIGSF 420 LCDPLDAAWT CMFGDIEVPV QIIQEGVICC HAPHHSPGKV TICVTSGNRE SCSEVREFEY 480 RVKPTVCSHC SQPQREASRS PEEMLLLVRF VQLLLSNPSM QKGDTSESGV DLLGKSRADE 540 DSWGQVIEAL LAGTSTLSIT TDWLLEELVK DKLQNWLSSK SQDDNMPCCS LSKKEQGVIH 600 IISGLGFEWA LHPFLKSGVN VNFRDINGWT ALHWAARFGR EKMVAALIAA GASAGAVTDP 660 NSKDPTGKTA ASVAATWGHK GLAGYLSEVA LTSHLFSLTL EESELSKGSA DVEAERTLIN 720 IPKTSPTTNE DQLSLKDSLA AARNAAQAAA RIQSAFRAHS FRRRQQKEFD ISAASSTSRD 780 EYGILLSDIP ELSAASKFAF RNSRDYNSAA LSIQKKYRGW KGRKDFLAFR QKVVKIQAHV 840 RGYQVRKNYR VCWAVGILEK VVLRWRRRGV GLRGFRLETD AIDESEDEDI LRVFRKQKVD 900 ATIDEAVSRV LSMVESPGAR QQYRRILEKY RQAKAELDGA EREISSTSYD VSSMENDDIY 960 QFV

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence

MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNQ PPQKPGSGSL FLFNKRVLRF  60
FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI  120
VLVHYRDISE LQARNNAGTI SQFSPISSST FSQSPISGNT QQLGSSPLLG ESYEQIHNLS  180
SPGSVEFSSS VVIKSNGMNY SQDIERTEEV TSSSSHDISQ ALRRLEEQLS LNDDRLEEIG  240
SCYTQNENSH DSEKSTQGQT PSVPGQGYEI EHQQQSLGHE GWTEMLDGCN SSEDVLAQVR  300
HVDKFDRNGV LLDEWTKELV AEQDGYTWLD YGGTNAQDVS LPVAKEVQNL AYPAYSAAVK  360
TYMTNPDNYT TLFDHNQIGI SLEEDLGLTI AQKQKFTIQE ISPEWAYASE TTKVFIIGSF  420
LCDPLDAAWT CMFGDIEVPV QIIQEGVICC HAPHHSPGKV TICVTSGNRE SCSEVREFEY  480
RVKPTVCSHC SQPQREASRS PEEMLLLVRF VQLLLSNPSM QKGDTSESGV DLLGKSRADE  540
DSWGQVIEAL LAGTSTLSIT TDWLLEELVK DKLQNWLSSK SQDDNMPCCS LSKKEQGVIH  600
IISGLGFEWA LHPFLKSGVN VNFRDINGWT ALHWAARFGR EKMVAALIAA GASAGAVTDP  660
NSKDPTGKTA ASVAATWGHK GLAGYLSEVA LTSHLFSLTL EESELSKGSA DVEAERTLIN  720
IPKTSPTTNE DQLSLKDSLA AARNAAQAAA RIQSAFRAHS FRRRQQKEFD ISAASSTSRD  780
EYGILLSDIP ELSAASKFAF RNSRDYNSAA LSIQKKYRGW KGRKDFLAFR QKVVKIQAHV  840
RGYQVRKNYR VCWAVGILEK VVLRWRRRGV GLRGFRLETD AIDESEDEDI LRVFRKQKVD  900
ATIDEAVSRV LSMVESPGAR QQYRRILEKY RQAKAELDGA EREISSTSYD VSSMENDDIY  960
QFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein