PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027097124.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 270aa    MW: 29391.6 Da    PI: 4.9473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027097124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.1e-06165193230
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPka 30 
                     r+++  ++rrRR ri ++ e L+ellP++
  XP_027097124.1 165 RQKAATADRRRRLRISEGVEALQELLPHP 193
                     899999**********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MEDESNCNAF PFTTTTLAFG GRGSSSSNNH NVYYMQEEAD HSHYLNFAAA AAASNDTTPH  60
HAPTTLPSWL CCQPTPQNYV HFLAENGASQ VHNEILPFNN SPGSSGFTTP EASFDMVVYK  120
RPHTEGVPPS NLTVLGFQIP SQNSNESYGT AVTGSPSTVP SSTSRQKAAT ADRRRRLRIS  180
EGVEALQELL PHPREELSQS RLGGESSSTP FILLEGYGHF LLRDQMQNEP LEEMMGRLLE  240
VNPLAATQLL ESGGLIVMPM SLAEGLRPQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-07bHLH family protein