PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027097108.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 292aa    MW: 31861.4 Da    PI: 5.1227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027097108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09165213255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+++  ++rrRR ri ++ e L+ellP++     +   Ka++L   +++Ik+Lq
  XP_027097108.1 165 RQKAATADRRRRLRISEGVEALQELLPHP-----REGGKASVLDDIIDHIKYLQ 213
                     899999**********************8.....5677999************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MEDESNCNAF PFTTTTLAFG GRGSSSSNNH NVYYMQEEAD HSHYLNFAAA AAASNDTTPH  60
HAPTTLPSWL CCQPTPQNYV HFLAENGASQ VHNEILPFNN SPGSSGFTTP EASFDMVVYK  120
RPHTEGVPPS NLTVLGFQIP SQNSNESYGT AVTGSPSTVP SSTSRQKAAT ADRRRRLRIS  180
EGVEALQELL PHPREGGKAS VLDDIIDHIK YLQFQVKELS QSRLGGESSS TPFILLEGYG  240
HFLLRDQMQN EPLEEMMGRL LEVNPLAATQ LLESGGLIVM PMSLAEGLRP QN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.19e-22bHLH family protein