PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027097020.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 396aa MW: 42343.9 Da PI: 7.4799

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027097020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.2	8.3e-40	62	185	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ XP_027097020.1 62 PKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSISAPlirnsyln 156 799*****************************************************************999766777777663333355555556 PP TCP 89 ............................k 89 XP_027097020.1 157 qnlgisqlrameeshsqqqrrifypgvsL 185 66666555444444444444444444441 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MSNFPLQLLE KRDLHQPSNC STSIYPTLAI GSNSTTSTTP VDAAETSGAD RPEAAANKKT 60 QPKRTSTKDR HTKVEGRGRR IRMPATCAAR VFQLTKELGH KSDGETIEWL LQQAEPAVIA 120 ATGTGTIPAN FTSLNISLRS SGSSISAPLI RNSYLNQNLG ISQLRAMEES HSQQQRRIFY 180 PGVSLSSAEN NNSSMSFNFP SESMNVNDML HAKQEVRDQA ACLDVSDRRI KRRPDEEDLT 240 CLQNHIGNYM VQSSSGSIAA SHQGQVQAAA FLMVTNNPSN TSTSQLIRGP DSLWTFPSSM 300 TGTNHNLLHR GGGASMSSNG LHFMNFPTSM ALLPGVHGAN NGGGSSGVFE GQSGMIAGLN 360 SLRPAVPGGG ASEANLHLGG EEDWHDATTS TTTHHS

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MSNFPLQLLE KRDLHQPSNC STSIYPTLAI GSNSTTSTTP VDAAETSGAD RPEAAANKKT  60
QPKRTSTKDR HTKVEGRGRR IRMPATCAAR VFQLTKELGH KSDGETIEWL LQQAEPAVIA  120
ATGTGTIPAN FTSLNISLRS SGSSISAPLI RNSYLNQNLG ISQLRAMEES HSQQQRRIFY  180
PGVSLSSAEN NNSSMSFNFP SESMNVNDML HAKQEVRDQA ACLDVSDRRI KRRPDEEDLT  240
CLQNHIGNYM VQSSSGSIAA SHQGQVQAAA FLMVTNNPSN TSTSQLIRGP DSLWTFPSSM  300
TGTNHNLLHR GGGASMSSNG LHFMNFPTSM ALLPGVHGAN NGGGSSGVFE GQSGMIAGLN  360
SLRPAVPGGG ASEANLHLGG EEDWHDATTS TTTHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-44	TCP family protein