PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096997.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 506aa MW: 54693.5 Da PI: 7.1516

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.6	4e-06	14	53	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e+ ++l+C+ ++ lC C + H+ H XP_027096997.1 14 VPCDFCNEQTAILYCRADSAKLCLLCDHHVHSAnalsrkH 53 57**************************999544555555 PP
2	zf-B_box	26.6	1.3e-08	56	101	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ +++++ C +++ lC+dC H H+++pl XP_027096997.1 56 SQICDNCASEPVSVRCATDNLVLCQDCDWDAHATsavsaaHDRIPL 101 579*************************999966888888888775 PP
3	CCT	64.7	2.7e-22	458	501	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ XP_027096997.1 458 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAS 501 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MVSPKRCSLA ESSVPCDFCN EQTAILYCRA DSAKLCLLCD HHVHSANALS RKHLRSQICD 60 NCASEPVSVR CATDNLVLCQ DCDWDAHATS AVSAAHDRIP LDSFSGCPSA LELASAWGLE 120 LQDKKPSQPP NWFDVAPTAP TAGGFLDSSW TLPKEVSVSP SVLLQDLMVP TDNNNPSSAV 180 IFSNCGPDLM KKHTSPSCGK QRLVIMKQLM GLLERDMGDG GGGGGGEELG PGTPNTSGGG 240 CCGVWQGNEE VRGLGNGGDG VVGIVNQQFQ PQQHQRQQEQ QNAPFMSLLM MQTPAIPKER 300 DRTVARNMWT TTACEPSTQI WDFNLGQLRG NDESNTLEVG YSANEVGFMM KSYSELLKEP 360 SSATTRGLEL SGLNCSIVNE DMAAFNNSNN PTASQGPATS ESNNLPIGRA TSGSGLGKRK 420 CYGGLKDVHL MEQTVLVKSE STTAAAAKVD MELLAKNRGN AMQRYKEKKK TRRYDKHIRY 480 ESRKARADTR KRVKGRFVKA SDAPDG

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MVSPKRCSLA ESSVPCDFCN EQTAILYCRA DSAKLCLLCD HHVHSANALS RKHLRSQICD  60
NCASEPVSVR CATDNLVLCQ DCDWDAHATS AVSAAHDRIP LDSFSGCPSA LELASAWGLE  120
LQDKKPSQPP NWFDVAPTAP TAGGFLDSSW TLPKEVSVSP SVLLQDLMVP TDNNNPSSAV  180
IFSNCGPDLM KKHTSPSCGK QRLVIMKQLM GLLERDMGDG GGGGGGEELG PGTPNTSGGG  240
CCGVWQGNEE VRGLGNGGDG VVGIVNQQFQ PQQHQRQQEQ QNAPFMSLLM MQTPAIPKER  300
DRTVARNMWT TTACEPSTQI WDFNLGQLRG NDESNTLEVG YSANEVGFMM KSYSELLKEP  360
SSATTRGLEL SGLNCSIVNE DMAAFNNSNN PTASQGPATS ESNNLPIGRA TSGSGLGKRK  420
CYGGLKDVHL MEQTVLVKSE STTAAAAKVD MELLAKNRGN AMQRYKEKKK TRRYDKHIRY  480
ESRKARADTR KRVKGRFVKA SDAPDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	1e-56	CO-like family protein