PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096958.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 698aa MW: 77230 Da PI: 5.6135

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.2e-14	494	540	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ XP_027096958.1 494 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 540 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MAAPPSSRQL QHMLQRAVQT VEWTYSLFWQ LCSQQRILVW GDGYYNGAIK TRKTVQPMEV 60 SAEEASLQRS QQLRELYDAL SSGDTNQQQQ QARRPSASLS PEDLTESEWF YLMCVSFSFA 120 PGVGLPGRAY AKRQHVWLTG ANEVDSKLFT RAILAKTVVC IPLLDGVVEL GTVERVQEDL 180 GFVQHIKSIF AEHQQPHQTP KPALSEHSTS SPATASGPRF HSSTVPVPAT YTTIHTSQDN 240 SDQIEEEEEE GEDDEEDADA DAVADSDSDG ETVPQSSAPS SGVQNPNSMP QIKTTEPSEL 300 VQLDMSEDIR LGSPEDGSNN WDSDYHLLPH GPNKNQEVQQ NRPDLCSSQS TPRWPRIQDP 360 GINHSLEPAP TTSGVPLSEN EFAQEDSHFS QTVSTVLHHQ SSRCSSSSMT GNVTQSIHSA 420 FSKWPATSCD SLAHGNLRGS SSQWTLKYIL FTVPFLHASN SGDETSPKSR DAAAISDSAS 480 RLRKGTPQEE LSANHVLAER RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR 540 KKIQELEASF RQMEADGHPK KNAKEQRSSS NNTAARVQVG QGLDRRKMRI VEGSPTGGGK 600 PKAAVVSPAE GVLQVEVSII ESDALVELQC PHREGLLLDV MQMLRELRVE ITAVQSSLSN 660 GFFVAELRAK VKEYGNGRRA TIMEVKRAIN QIIPQYLL

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MAAPPSSRQL QHMLQRAVQT VEWTYSLFWQ LCSQQRILVW GDGYYNGAIK TRKTVQPMEV  60
SAEEASLQRS QQLRELYDAL SSGDTNQQQQ QARRPSASLS PEDLTESEWF YLMCVSFSFA  120
PGVGLPGRAY AKRQHVWLTG ANEVDSKLFT RAILAKTVVC IPLLDGVVEL GTVERVQEDL  180
GFVQHIKSIF AEHQQPHQTP KPALSEHSTS SPATASGPRF HSSTVPVPAT YTTIHTSQDN  240
SDQIEEEEEE GEDDEEDADA DAVADSDSDG ETVPQSSAPS SGVQNPNSMP QIKTTEPSEL  300
VQLDMSEDIR LGSPEDGSNN WDSDYHLLPH GPNKNQEVQQ NRPDLCSSQS TPRWPRIQDP  360
GINHSLEPAP TTSGVPLSEN EFAQEDSHFS QTVSTVLHHQ SSRCSSSSMT GNVTQSIHSA  420
FSKWPATSCD SLAHGNLRGS SSQWTLKYIL FTVPFLHASN SGDETSPKSR DAAAISDSAS  480
RLRKGTPQEE LSANHVLAER RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR  540
KKIQELEASF RQMEADGHPK KNAKEQRSSS NNTAARVQVG QGLDRRKMRI VEGSPTGGGK  600
PKAAVVSPAE GVLQVEVSII ESDALVELQC PHREGLLLDV MQMLRELRVE ITAVQSSLSN  660
GFFVAELRAK VKEYGNGRRA TIMEVKRAIN QIIPQYLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	499	504	ERRRRE
2	500	505	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	5e-92	bHLH family protein