PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096949.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 703aa MW: 77785.7 Da PI: 5.7156

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.3e-14	499	545	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ XP_027096949.1 499 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 545 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MAAPPSSRQL QHMLQRAVQT VEWTYSLFWQ LCSQQRILVW GDGYYNGAIK TRKTVQPMEV 60 SAEEASLQRS QQLRELYDAL SSGDTNQQQQ QARRPSASLS PEDLTESEWF YLMCVSFSFA 120 PGVGLPGRAY AKRQHVWLTG ANEVDSKLFT RAILAKSARI QTVVCIPLLD GVVELGTVER 180 VQEDLGFVQH IKSIFAEHQQ PHQTPKPALS EHSTSSPATA SGPRFHSSTV PVPATYTTIH 240 TSQDNSDQIE EEEEEGEDDE EDADADAVAD SDSDGETVPQ SSAPSSGVQN PNSMPQIKTT 300 EPSELVQLDM SEDIRLGSPE DGSNNWDSDY HLLPHGPNKN QEVQQNRPDL CSSQSTPRWP 360 RIQDPGINHS LEPAPTTSGV PLSENEFAQE DSHFSQTVST VLHHQSSRCS SSSMTGNVTQ 420 SIHSAFSKWP ATSCDSLAHG NLRGSSSQWT LKYILFTVPF LHASNSGDET SPKSRDAAAI 480 SDSASRLRKG TPQEELSANH VLAERRRREK LNERFIILRS LVPFVTKMDK ASILGDTIEY 540 VKQLRKKIQE LEASFRQMEA DGHPKKNAKE QRSSSNNTAA RVQVGQGLDR RKMRIVEGSP 600 TGGGKPKAAV VSPAEGVLQV EVSIIESDAL VELQCPHREG LLLDVMQMLR ELRVEITAVQ 660 SSLSNGFFVA ELRAKVKEYG NGRRATIMEV KRAINQIIPQ YLL

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MAAPPSSRQL QHMLQRAVQT VEWTYSLFWQ LCSQQRILVW GDGYYNGAIK TRKTVQPMEV  60
SAEEASLQRS QQLRELYDAL SSGDTNQQQQ QARRPSASLS PEDLTESEWF YLMCVSFSFA  120
PGVGLPGRAY AKRQHVWLTG ANEVDSKLFT RAILAKSARI QTVVCIPLLD GVVELGTVER  180
VQEDLGFVQH IKSIFAEHQQ PHQTPKPALS EHSTSSPATA SGPRFHSSTV PVPATYTTIH  240
TSQDNSDQIE EEEEEGEDDE EDADADAVAD SDSDGETVPQ SSAPSSGVQN PNSMPQIKTT  300
EPSELVQLDM SEDIRLGSPE DGSNNWDSDY HLLPHGPNKN QEVQQNRPDL CSSQSTPRWP  360
RIQDPGINHS LEPAPTTSGV PLSENEFAQE DSHFSQTVST VLHHQSSRCS SSSMTGNVTQ  420
SIHSAFSKWP ATSCDSLAHG NLRGSSSQWT LKYILFTVPF LHASNSGDET SPKSRDAAAI  480
SDSASRLRKG TPQEELSANH VLAERRRREK LNERFIILRS LVPFVTKMDK ASILGDTIEY  540
VKQLRKKIQE LEASFRQMEA DGHPKKNAKE QRSSSNNTAA RVQVGQGLDR RKMRIVEGSP  600
TGGGKPKAAV VSPAEGVLQV EVSIIESDAL VELQCPHREG LLLDVMQMLR ELRVEITAVQ  660
SSLSNGFFVA ELRAKVKEYG NGRRATIMEV KRAINQIIPQ YLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	504	509	ERRRRE
2	505	510	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	2e-97	bHLH family protein