PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096810.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 632aa MW: 68902.3 Da PI: 9.5363

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096810.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H XP_027096810.1 91 FVCEVCNKGFQREQNLQLHRRGH 113 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence
MKDYYHQLEM RNKKESETMA ASSSALFLAM RNGEDHIKSK QHHSAGPSSS SAAPPPPDQQ 60 QRRKRNQPGT PNPEAEVIAL SPNTLMATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK 120 QKTTKEVKRK VYLCPEPTCV HHHPSRALGD LTGIKKHYSR KHGEKKYKCN KCAKKYAVHS 180 DWKAHTKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALAQ ESARNPPPLG IGASQLFGSS 240 SNSSTMSMDM SQIGSQMSAG QDHDHQNQPK ADMLRLGSAR STGVTGQFDN LIGSSMGSAL 300 RPSKSMASSS YFLPESDQED YHLENHSQHE FFSNKTLHHG LMQFSDLQNN SSASAGSSFF 360 NLSIFPSSSN AGNLGNNSPN STSNISSSFL FSNLCNSSHH HHASGSSNGG STLFSDHLVR 420 QHLSSASIPS HYSTSIQSNN ISPYMSATAL LQKAAQLSST TSNSTGAFLK SFTSGASSSG 480 TKPDPDPISS TQFGGIFGDY NTGNHIYEFM SSITGPRSSI FRPFGGAPHE HDYGYSATKL 540 NFGEQSLRHR SPSFSNLEQA SKMQQNLGVR FGGADQGLTR DFLGVGPAGE LVRSMSGGGF 600 GQREHGVEIK PLDSERKTAP ESPPFGGGVN FR

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence

MKDYYHQLEM RNKKESETMA ASSSALFLAM RNGEDHIKSK QHHSAGPSSS SAAPPPPDQQ  60
QRRKRNQPGT PNPEAEVIAL SPNTLMATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK  120
QKTTKEVKRK VYLCPEPTCV HHHPSRALGD LTGIKKHYSR KHGEKKYKCN KCAKKYAVHS  180
DWKAHTKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALAQ ESARNPPPLG IGASQLFGSS  240
SNSSTMSMDM SQIGSQMSAG QDHDHQNQPK ADMLRLGSAR STGVTGQFDN LIGSSMGSAL  300
RPSKSMASSS YFLPESDQED YHLENHSQHE FFSNKTLHHG LMQFSDLQNN SSASAGSSFF  360
NLSIFPSSSN AGNLGNNSPN STSNISSSFL FSNLCNSSHH HHASGSSNGG STLFSDHLVR  420
QHLSSASIPS HYSTSIQSNN ISPYMSATAL LQKAAQLSST TSNSTGAFLK SFTSGASSSG  480
TKPDPDPISS TQFGGIFGDY NTGNHIYEFM SSITGPRSSI FRPFGGAPHE HDYGYSATKL  540
NFGEQSLRHR SPSFSNLEQA SKMQQNLGVR FGGADQGLTR DFLGVGPAGE LVRSMSGGGF  600
GQREHGVEIK PLDSERKTAP ESPPFGGGVN FR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	6e-98	C2H2 family protein