PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096705.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 332aa    MW: 36532.1 Da    PI: 7.9119
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.55.8e-15248273126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG C+yGd C+FaHg
  XP_027096705.1 248 FKTELCNKWQETGACPYGDHCQFAHG 273
                     79***********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MEKESSITSV HGGTSNIRRN LSYNDISRSP SPSPSFLNYE SDGGEFTTYE KEIMMASRLH  60
QSDLLTDLHH HQDLVDRQNT VLSYMKEAAK QAQALRQENI NLKMVNAELT NRLGLLIKAT  120
TEYAASLGFS GVDPGLNVDS LLNGLSRMSL ADGAGVNEGN AWSGPAADGD SPSPTSVMES  180
GGVEGSGEGT PGRILLPKSI SIRSTGYLKP VQPGGNGGGK VNKHKVFVRG GKKEEQPLEL  240
EVYNQGMFKT ELCNKWQETG ACPYGDHCQF AHGIQELRPV IRHPRYKTEV CRMVLNGDHC  300
PYGHRCHFRH TLTDQEKVIR SINIRSLKVL NR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-57C3H family protein