PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027096705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 332aa MW: 36532.1 Da PI: 7.9119 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 46.5 | 5.8e-15 | 248 | 273 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg XP_027096705.1 248 FKTELCNKWQETGACPYGDHCQFAHG 273 79***********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence |
MEKESSITSV HGGTSNIRRN LSYNDISRSP SPSPSFLNYE SDGGEFTTYE KEIMMASRLH 60 QSDLLTDLHH HQDLVDRQNT VLSYMKEAAK QAQALRQENI NLKMVNAELT NRLGLLIKAT 120 TEYAASLGFS GVDPGLNVDS LLNGLSRMSL ADGAGVNEGN AWSGPAADGD SPSPTSVMES 180 GGVEGSGEGT PGRILLPKSI SIRSTGYLKP VQPGGNGGGK VNKHKVFVRG GKKEEQPLEL 240 EVYNQGMFKT ELCNKWQETG ACPYGDHCQF AHGIQELRPV IRHPRYKTEV CRMVLNGDHC 300 PYGHRCHFRH TLTDQEKVIR SINIRSLKVL NR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 1e-57 | C3H family protein |