PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096660.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 718aa    MW: 80925.9 Da    PI: 5.3341
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.59.9e-1173437141374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+  d+  a++lL+++++++sp+gdp++Rla +f++AL+arla+++++ly+al+++++s    ++ l a+ ++ e++P+ ++s+
  XP_027096660.1 343 LRDLLTRCAHAVAIYDNWTANELLKQIRQHSSPYGDPTERLAYCFANALEARLAGMGTTLYSALTTTRAS---AADILRAYGAYLEICPFQRMSN 434
                     6899************************************************************999998...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN+ I + +++ +r+HiiDf+i +G+QWp+L++ ++ Rp+gpp+lRiTgv+ p++g   +e++eetg rLa++A++++vpfefn+ vakr+++
  XP_027096660.1 435 IFANKSIAKQTSTVTRIHIIDFGILYGFQWPCLIHGISLRPGGPPKLRITGVDLPQPGfrPAERIEETGGRLANYARRFNVPFEFNA-VAKRWDT 528
                     *********************************************************9*****************************.8****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ e+L+++++E+++Vn+ ++l +++de+v ++s+rd+v++l+k+++P+++v+   +  ++++ F++rf eal+++s+lfd++ea+lpre+++r+
  XP_027096660.1 529 ITAEDLAIDEDEMVVVNCLYRLRNVPDETVLQSSPRDSVMNLIKKINPEMFVHGVLNGTYGAPFFVTRFKEALYHFSSLFDMFEATLPREDQNRS 623
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+e++gre++nv+aceg+er+er  ++++W+ r ++aGFk++pl+++++ ++++ ++ ++++ + ++ + +++++gWk+r ++++S+W+
  XP_027096660.1 624 MFEKEVIGREVMNVIACEGTERIERPDSYKQWQVRNQRAGFKQLPLNSEIMREIRAKVKSYYNKDFLIDADGAWMLQGWKGRVIYALSCWK 714
                     **************************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    
MDTLFHGDGQ SIKSANEFPQ LDFDQQHSLS QGNLVNECQF DHLFNNVTGL SKLSSHLDVN  60
STPCEVGDDS PVEGDYFDGV FKYLQRMLME EDDLLDKPCM LQDCLALQAA EKSFYEVLNE  120
NQPSSPSRSP SPTTTFGGET FDSPIDDFAG IWPNHVIDHV VPHQTIQYNF QPTCIPGDSL  180
DLSVDYLVDT CLSPSQTIQS STNINTHVMP QLGEDVEECR IVKFYQNKMP SILAAAGEQS  240
SHHQSRKNSA NHDREGGDHD EDRPTKHLAS HTDEIANTDD YDNALLCPAR NPNFYGESPS  300
RGGIASPDLE GTKKQQYVPP TTAKRGRPRA GQKRDSIREL VDLRDLLTRC AHAVAIYDNW  360
TANELLKQIR QHSSPYGDPT ERLAYCFANA LEARLAGMGT TLYSALTTTR ASAADILRAY  420
GAYLEICPFQ RMSNIFANKS IAKQTSTVTR IHIIDFGILY GFQWPCLIHG ISLRPGGPPK  480
LRITGVDLPQ PGFRPAERIE ETGGRLANYA RRFNVPFEFN AVAKRWDTIT AEDLAIDEDE  540
MVVVNCLYRL RNVPDETVLQ SSPRDSVMNL IKKINPEMFV HGVLNGTYGA PFFVTRFKEA  600
LYHFSSLFDM FEATLPREDQ NRSMFEKEVI GREVMNVIAC EGTERIERPD SYKQWQVRNQ  660
RAGFKQLPLN SEIMREIRAK VKSYYNKDFL IDADGAWMLQ GWKGRVIYAL SCWKPAGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-175GRAS family protein