PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096629.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27535.3 Da    PI: 8.3142
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.62.6e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs++gklye++s
  XP_027096629.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIVFSNRGKLYEFCS 59
                    79***********************************************96 PP

2K-box90.33.5e-3080171798
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++++++ +  +qe+ kLk+++e Lq++qRhllGedL +L  k+L qLe+qL+ sl++iRs+K++++l+q+++lq+kek+l e nkaLr+k 
  XP_027096629.1  80 MNQSSKDPQGDYQEYLKLKAKVEVLQQSQRHLLGEDLAQLGAKQLDQLERQLDASLRQIRSTKTQHMLDQLSDLQQKEKSLMEVNKALRNKQ 171
                     4577888999*******************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIVFSN RGKLYEFCSS  60
SSMSKTLERY HRCSYADAGM NQSSKDPQGD YQEYLKLKAK VEVLQQSQRH LLGEDLAQLG  120
AKQLDQLERQ LDASLRQIRS TKTQHMLDQL SDLQQKEKSL MEVNKALRNK QLEETTAAFQ  180
LSWDVSEEHN LRHRSQTIHP EGFFQPLECN SSIMNYNMVV ADAEAEPTQN PSGILPGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.12e-95MIKC_MADS family protein