PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027096429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 582aa MW: 66378.3 Da PI: 8.1136 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 368.1 | 1.2e-112 | 196 | 566 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +++lL++cA+ +s+ d++ a++lL+++++++sp+gd ++Rla+yf+ AL+ar++++++++y a++++ ++ +++l+a++++ +sP+ k+s+ XP_027096429.1 196 MRSLLTQCAQSISDFDNRTANQLLNQIRQHSSPHGDGNERLAHYFADALEARVSGMGTTMYTAFSTRVSA----ADTLKAYQAYILASPFRKMSN 286 5799*********************************************************999999986....99******************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 +++ ++I + + +++++HiiDf+i +G++Wp+++qaL++Rp+gpp+lRiTg++ p++g +e++eetg+rLa+++++++vpfe+++ +a+++e+ XP_027096429.1 287 ILTGKTIQKLTTEASQIHIIDFGILYGFHWPCFIQALSKRPRGPPKLRITGIDLPQPGlrPAERVEETGRRLAHYCKKFNVPFEYHA-IARKWET 380 ***************************************************************************************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++leeL++++ E+++ + ++l +++de+ ++s+rd+vL+l+k+++P+++v+ + +n++ F+ rf eal+++s+lfd+++++lpr++++r XP_027096429.1 381 ISLEELKIDRCETVIATCLYRLRNVPDETSVTSSARDTVLHLIKKINPDLFVHGILNGTYNAPFFVMRFREALHHFSSLFDMFDKTLPRHDQDRL 475 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + E+e+lgr+ +nv+aceg++r+er et+++W++r e+aGF+++pl+++++k++++ ++ + + + v+e+ +++++gWk+r ++++S W+ XP_027096429.1 476 VFEKEVLGRQSMNVIACEGTARIERPETYKQWQARNERAGFRQIPLNKDIVKEVRAKVKLQYHKDFLVDEDGKWILQGWKGRVIYALSYWK 566 **************************************************************888*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence |
MAGFEYDFPS ITSSGPLNLS NFPVDALPGE HDGDSSLPGD TFGAVLQYLN QMLMGEDLEQ 60 RPCMYQELSA LQAAEKSFYD ALTGVEVIKV ADEKEKERDK FTNGSAKKRN HYRQDDEHVE 120 AGRATKQFAS YAEEPTEIFD EALLCSSSNA GSWDLSYCEA KPGRRNNQQI GLTQEPKRGR 180 PRASERKLNI REVVDMRSLL TQCAQSISDF DNRTANQLLN QIRQHSSPHG DGNERLAHYF 240 ADALEARVSG MGTTMYTAFS TRVSAADTLK AYQAYILASP FRKMSNILTG KTIQKLTTEA 300 SQIHIIDFGI LYGFHWPCFI QALSKRPRGP PKLRITGIDL PQPGLRPAER VEETGRRLAH 360 YCKKFNVPFE YHAIARKWET ISLEELKIDR CETVIATCLY RLRNVPDETS VTSSARDTVL 420 HLIKKINPDL FVHGILNGTY NAPFFVMRFR EALHHFSSLF DMFDKTLPRH DQDRLVFEKE 480 VLGRQSMNVI ACEGTARIER PETYKQWQAR NERAGFRQIP LNKDIVKEVR AKVKLQYHKD 540 FLVDEDGKWI LQGWKGRVIY ALSYWKPAHE RIGVSVVLQC SH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46600.1 | 1e-173 | GRAS family protein |