PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096398.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 297aa MW: 33694.6 Da PI: 6.4362

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.8e-18	88	141	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_027096398.1 88 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 141 456899***********************************************9 PP
2	HD-ZIP_I/II	130.5	6.4e-42	87	179	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr+++a+k+en++L++++++L++e+++ XP_027096398.1 87 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKRQFEAIKAENDALQAQNQKLHAEISA 179 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MTCTAAMAFF PANFMLQTSH HDQDHHDSQQ PPTSLSTPIL SSCAPQDFHG VASLLGKRSM 60 SFSGVDVCDQ ENHGEDDLSD DGSQMGEKKR RLNMEQVKTL EKNFELGNKL EPERKMQLAR 120 ALGLQPRQIA IWFQNRRARW KTKQLEKDYE VLKRQFEAIK AENDALQAQN QKLHAEISAL 180 KNREPTESIN LNKETEGSCS NRSENSSDIK LDISRTPAID RDSPLSTHPT ASRSLFPTSM 240 RSAGGMTTTQ LFHNSTRPDL QCQKMDHSTV KEESLCNMFG IDDQAGFWPW LEQQHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-111	HD-ZIP family protein