PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027096329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | YABBY | ||||||||
Protein Properties | Length: 190aa MW: 20882.7 Da PI: 9.6248 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 146.8 | 2.2e-45 | 19 | 164 | 1 | 163 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +d++++se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC +l + +++ l+ + ++ ++++ + ++ ++s XP_027096329.1 19 MDLVQQSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCGNLSFL------STRPPPP---------LQGQCFEHQPTIQTFFSDLKKGQSS 98 578999*************************************97442......2333333.........2222223333333333322222222 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ss s++ + ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + XP_027096329.1 99 SSS--SSTSGEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKATNPEIPHREAFSAAAKNWARY 164 222..256778899****************************************************76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence |
MSSHSSSSSS LNLEDKATMD LVQQSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC 60 GNLSFLSTRP PPPLQGQCFE HQPTIQTFFS DLKKGQSSSS SSSTSGEPSS PKAPFVVKPP 120 EKKHRLPSAY NRFMKEEIQR IKATNPEIPH REAFSAAAKN WARYIPTAPT GSIAESSNSN 180 HVRFRSGTKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 7e-65 | YABBY family protein |