PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096305.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 339aa    MW: 38357.2 Da    PI: 6.4427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.7e-15255280126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG+C+yG++C+FaHg
  XP_027096305.1 255 FKTELCNKWQETGECPYGENCQFAHG 280
                     79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MEMEKEISKT GQRGGRTARN DVSFNNIPLP PASPPLPFVN YPGDIGLAPY RLSELEIRMM  60
MSRLRHSDML TDLHHHQELI DRQYTVLSYM EETAKEAQAL RQENISLKMI NAELTNRLSV  120
LLRATSEYAA SVELSGLGLG PGSDMSSVLH GLDKMNLGDG ANEDRRNRGD DVEGAGEDTS  180
QDTTVDTDLA EGSENDEVNR VSLPKSISVR SDRKLKTVQT GGSSEGQIYK QRVYVPGREK  240
EKQAVELEVY NQGMFKTELC NKWQETGECP YGENCQFAHG IKELRPVLRH PRYKTEVCRM  300
VLNGDHCPYG HRCHFRHTLT DEEKLIRSMN IRPLKPLNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.29e-69C3H family protein