PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096278.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 756aa    MW: 85253.2 Da    PI: 5.0832
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.64.3e-1033847532373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       lLl+cA+ v ++d + a+  L+ ++++a ++gdp qRla  f++AL+arla++++ely+++++++ s    +eel+a++++  + P+ +++  
  XP_027096278.1 384 SALLLNCAHSVVADDRRTANDQLKLIKQHACSTGDPQQRLAILFANALEARLAGNGPELYATVKSKRRS---AAEELKAFRVYL-CAPFRQIASC 474
                     579*********************************************************999999998...899999999865.89******** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN++Il+a+++++++Hi+Df+i++G+QWp+L+q+L++R++gpp+lRiTg++ p++g   +e++eetg+rLak++e+++vpf ++++  k++e++
  XP_027096278.1 475 FANKMILKAASRAKTLHIVDFGIGYGFQWPSLIQQLSNRDGGPPKLRITGIEYPKPGfrPAERIEETGRRLAKYCERFNVPFVYQAIPIKNWEKI 569
                     ********************************************************9************************************** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +leeL++ ++E+++Vn++l+ +++ld+ v+ + +rd+vL+l+++++P ++v      ++ ++ Fl+r  eal ++sa+fd l+ +lp+++++r k
  XP_027096278.1 570 RLEELKLTRDEVIVVNCQLRFKNMLDQVVDGDCPRDAVLRLIREINPAIFVSDVLSGQLCAPFFLTRCREALFFFSAVFDFLHHNLPPDDKQRLK 664
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      E+e++g e++n +aceg+er+er et+++W+ r ++aGFk +pl+++  k+ ++ +++ + + +  +ee g++++gWk++ ++++S+W
  XP_027096278.1 665 FEQEFMGTEVMNTIACEGSERVERAETYKQWQIRYKRAGFKMLPLNQDLKKELRSKVKEGYHKDFLFDEEGGWILQGWKGKIITACSCW 753
                     ***********************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    
MTINRIMDHQ FPNLVNSVND SEFGNGINLA SSEQSNLDIE FEKFWNSVNG FEFNSSVVFP  60
SFEQQPLSSC TFAPLYNVSS EVDFPGDYES YPMLKYINQM LMEDFSEEQP NISPDPLALK  120
AAEKSLYHVL GKSYPPSPHE PVAALDQIAE SSQESTDSCS QHYTDGCDTD TSTIDSQPIL  180
DPVESSGKGH QPWDKYFKSS FQTSSLDSVH SLSSSSNSGD GLIGFLTNEN MISSSVSDSD  240
TILQFKKGLE EGNKFLPAGK LMNIDLDKYT LPSKLQDVGL VTTGKKDEEY LRTGMRGRKH  300
QHQDDGDAHL GRKYKQSAVS MEEVELSEAF DRILLFGDSR GQDLCCNVDV EQPTQLSEAL  360
DHESDVSKST EERLGTDNEA LDLSALLLNC AHSVVADDRR TANDQLKLIK QHACSTGDPQ  420
QRLAILFANA LEARLAGNGP ELYATVKSKR RSAAEELKAF RVYLCAPFRQ IASCFANKMI  480
LKAASRAKTL HIVDFGIGYG FQWPSLIQQL SNRDGGPPKL RITGIEYPKP GFRPAERIEE  540
TGRRLAKYCE RFNVPFVYQA IPIKNWEKIR LEELKLTRDE VIVVNCQLRF KNMLDQVVDG  600
DCPRDAVLRL IREINPAIFV SDVLSGQLCA PFFLTRCREA LFFFSAVFDF LHHNLPPDDK  660
QRLKFEQEFM GTEVMNTIAC EGSERVERAE TYKQWQIRYK RAGFKMLPLN QDLKKELRSK  720
VKEGYHKDFL FDEEGGWILQ GWKGKIITAC SCWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein