PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027096116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 749aa MW: 84038.2 Da PI: 6.1158 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 338.2 | 1.5e-103 | 379 | 746 | 4 | 373 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lL++cA++v+++d++ a++ L+++++++s gdp qRla+ +++AL+arla+++ l al++++ s ++++l+a++++ +sP+ + a XP_027096116.1 379 LLISCAQFVAADDHRTATEKLKQIRQHVSCLGDPHQRLAFILVNALEARLAGTGRDLHVALTSKRIS---TADQLKAYRVYL-CSPLRPTFSFFA 469 8***************************************************999999888888887...899999999865.99**999999** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 N++Ilea+++++ +Hi+Df+i+ G+QWp+L+q+L++R++gpp+lRiTg++ p++g +e++++tg+rLak++++++vpfe++++++++++++++ XP_027096116.1 470 NEMILEAASRATILHIVDFGITFGFQWPTLIQQLSNRDGGPPKLRITGIDFPQPGfrPAESMQQTGHRLAKYCARFNVPFEYQAIATRNWDKITI 564 ******************************************************9*****************************9999******* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 eeL++ ++E+laV +++ l+++ d+ v+ e +rd+vL+l++ ++P+++v a+++++ Fl+rf +al+++ ++fd+++++lpr++ +r+k E XP_027096116.1 565 EELKLTRNEVLAVACQFGLKNISDDMVEGECPRDAVLSLIRAMNPDILVTDVLSAQLSGPFFLTRFRDALSFFYTMFDAIDNNLPRKDAQRRKFE 659 *********************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +e+lg ++ n+vaceg +r+er+et++kW++r ++aGF+++pl+++ k+ + ++k + + ++++e+ +l++gWk++ + ++S+W XP_027096116.1 660 QEFLGTQLLNIVACEGLARVERCETYRKWHARYNRAGFRQLPLNQDLLKELRGKVKKAYHKDFMLDEDGCWLLQGWKGKIISACSCW 746 ***********************************************************888************************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence |
MDHQFLNLNG SGSDGTVVSS LEQSELNFQS QKVWDPVKRF GFNDGIVFGS LDPEPLDPSS 60 FAPFFNVSTE VDFPDEHECY PVLKHINQML MEENLEEQQS MPTDPLALQA AEKSLYEILG 120 KNYPHSPRAT FVTALENNAH TPDGFSESSS NHVTNCSDSG SNSAASWPIP ELSELSGKPG 180 HHLVNSCKSS FHTNSVQCLH MLKNSTICGN GQVASLTDEN LIPSFYSNHE TMMLFKKGLE 240 EGKKFLPSGN QLIVDLDKHT LSLKLELLAE KKKDEVEKLA EISGGRKHQN QDDDDSLRGR 300 SNKQSATSEE EVELSELLDR VLLHADSKGL EADSDVDVEQ PNGSFKTLSR SKFLHRSRVG 360 MSPEKRLGAE GEALDLFGLL ISCAQFVAAD DHRTATEKLK QIRQHVSCLG DPHQRLAFIL 420 VNALEARLAG TGRDLHVALT SKRISTADQL KAYRVYLCSP LRPTFSFFAN EMILEAASRA 480 TILHIVDFGI TFGFQWPTLI QQLSNRDGGP PKLRITGIDF PQPGFRPAES MQQTGHRLAK 540 YCARFNVPFE YQAIATRNWD KITIEELKLT RNEVLAVACQ FGLKNISDDM VEGECPRDAV 600 LSLIRAMNPD ILVTDVLSAQ LSGPFFLTRF RDALSFFYTM FDAIDNNLPR KDAQRRKFEQ 660 EFLGTQLLNI VACEGLARVE RCETYRKWHA RYNRAGFRQL PLNQDLLKEL RGKVKKAYHK 720 DFMLDEDGCW LLQGWKGKII SACSCWIPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-158 | GRAS family protein |