PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027096069.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 749aa    MW: 84038.2 Da    PI: 6.1158
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027096069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.21.5e-1033797464373
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lL++cA++v+++d++ a++ L+++++++s  gdp qRla+ +++AL+arla+++  l  al++++ s   ++++l+a++++  +sP+     + a
  XP_027096069.1 379 LLISCAQFVAADDHRTATEKLKQIRQHVSCLGDPHQRLAFILVNALEARLAGTGRDLHVALTSKRIS---TADQLKAYRVYL-CSPLRPTFSFFA 469
                     8***************************************************999999888888887...899999999865.99**999999** PP

            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     N++Ilea+++++ +Hi+Df+i+ G+QWp+L+q+L++R++gpp+lRiTg++ p++g   +e++++tg+rLak++++++vpfe++++++++++++++
  XP_027096069.1 470 NEMILEAASRATILHIVDFGITFGFQWPTLIQQLSNRDGGPPKLRITGIDFPQPGfrPAESMQQTGHRLAKYCARFNVPFEYQAIATRNWDKITI 564
                     ******************************************************9*****************************9999******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     eeL++ ++E+laV +++ l+++ d+ v+ e +rd+vL+l++ ++P+++v     a+++++ Fl+rf +al+++ ++fd+++++lpr++ +r+k E
  XP_027096069.1 565 EELKLTRNEVLAVACQFGLKNISDDMVEGECPRDAVLSLIRAMNPDILVTDVLSAQLSGPFFLTRFRDALSFFYTMFDAIDNNLPRKDAQRRKFE 659
                     *********************************************************************************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +e+lg ++ n+vaceg +r+er+et++kW++r ++aGF+++pl+++  k+ +  ++k + + ++++e+  +l++gWk++ + ++S+W
  XP_027096069.1 660 QEFLGTQLLNIVACEGLARVERCETYRKWHARYNRAGFRQLPLNQDLLKELRGKVKKAYHKDFMLDEDGCWLLQGWKGKIISACSCW 746
                     ***********************************************************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    
MDHQFLNLNG SGSDGTVVSS LEQSELNFQS QKVWDPVKRF GFNDGIVFGS LDPEPLDPSS  60
FAPFFNVSTE VDFPDEHECY PVLKHINQML MEENLEEQQS MPTDPLALQA AEKSLYEILG  120
KNYPHSPRAT FVTALENNAH TPDGFSESSS NHVTNCSDSG SNSAASWPIP ELSELSGKPG  180
HHLVNSCKSS FHTNSVQCLH MLKNSTICGN GQVASLTDEN LIPSFYSNHE TMMLFKKGLE  240
EGKKFLPSGN QLIVDLDKHT LSLKLELLAE KKKDEVEKLA EISGGRKHQN QDDDDSLRGR  300
SNKQSATSEE EVELSELLDR VLLHADSKGL EADSDVDVEQ PNGSFKTLSR SKFLHRSRVG  360
MSPEKRLGAE GEALDLFGLL ISCAQFVAAD DHRTATEKLK QIRQHVSCLG DPHQRLAFIL  420
VNALEARLAG TGRDLHVALT SKRISTADQL KAYRVYLCSP LRPTFSFFAN EMILEAASRA  480
TILHIVDFGI TFGFQWPTLI QQLSNRDGGP PKLRITGIDF PQPGFRPAES MQQTGHRLAK  540
YCARFNVPFE YQAIATRNWD KITIEELKLT RNEVLAVACQ FGLKNISDDM VEGECPRDAV  600
LSLIRAMNPD ILVTDVLSAQ LSGPFFLTRF RDALSFFYTM FDAIDNNLPR KDAQRRKFEQ  660
EFLGTQLLNI VACEGLARVE RCETYRKWHA RYNRAGFRQL PLNQDLLKEL RGKVKKAYHK  720
DFMLDEDGCW LLQGWKGKII SACSCWIPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-158GRAS family protein