PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027095667.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YC | ||||||||
Protein Properties | Length: 134aa MW: 15311.7 Da PI: 10.6105 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45 | 2.4e-14 | 11 | 96 | 13 | 97 |
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 a++ ++ +P r+kki+k d ++k++ +ea l+s++ +lf+ l+ +s e+k++t+k + aav+r + dfl+d p XP_027095667.1 11 AEETHRPGIPTHRVKKIMKLDREIKKVNSEAVFLISNSTQLFLQFLAEKSAQVVLEKKKKTIKLEHLRAAVKRHLpTSDFLLDSLP 96 444556679***************************************************************975389*****987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence |
MMAEHEEQNA AEETHRPGIP THRVKKIMKL DREIKKVNSE AVFLISNSTQ LFLQFLAEKS 60 AQVVLEKKKK TIKLEHLRAA VKRHLPTSDF LLDSLPPPAQ PSDQLPKDRP RPRSSDKPVP 120 PGSRRIDAFF NKCN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 5e-43 | NF-YC family protein |