PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027095628.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 285aa MW: 32151.8 Da PI: 6.729

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027095628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.2	3.2e-06	122	141	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ XP_027095628.1 122 FSCPVCNKTFNRYNNMQMHM 141 89*****************9 PP
2	zf-C2H2	16.7	2.1e-05	207	229	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F + + ++H +++ XP_027095628.1 207 FQCRKCGKPFAVRGDWRTHEKNC 229 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MQRIHCCSNI SSGETDEIGS LEADDQDDDS LTLLSLAPPG QNNTSKNLLD CSFEYSSSQL 60 PQDNYQQCPR TNAENGVTVA LHIGLPTSEA SSTSHAHNFG VLPEGQYWIP TPAQILVGPT 120 QFSCPVCNKT FNRYNNMQMH MWGHGSQYRK GPESLRGTKP ASSMLKLPCY CCAEGCKNNI 180 DHPRSRPLKD FRTLQTHYKR KHGTKPFQCR KCGKPFAVRG DWRTHEKNCG KLWFCICGSD 240 FKHKRSLKDH IRAFGDGHAA HSQDLRGIEE LVELEEDDEE EEDNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-117	C2H2 family protein