PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027095625.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 413aa MW: 44962.4 Da PI: 8.583

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027095625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.4	4.9e-31	245	300	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH+rF+ a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_027095625.1 245 KSRRCWSPELHKRFLLALQQLGGAHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 300 68****************************************************97 PP
2	Myb_DNA-binding	40.8	4.9e-13	247	298	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++++++ a +qlGg t+k I + m g+t ++ks++qky+ XP_027095625.1 247 RRCWSPELHKRFLLALQQLGGAhvaTPKQIRELMKvDGLTNDEVKSHLQKYR 298 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MNGMINYHNN NHHDSSNYDE KMQRTQEYID SLEEERRKIL VFQRELPLCL ELVTQAIETC 60 KQQLSSGTTV TEYNFHGQSE CSEQTSTDGP VLEEFIPIKR ALSSDDDEQQ SRKPKKSNIS 120 NGNDKDNKSN NNDKAASSKK SDWLRSVQLW NQTPDPPQKE DSPKKVSVVE VKRNGSSGGA 180 FHPFKKEKSI GANAGKLDVP KSGDKTSIPA AEASSTEETG GTSGGGGGGN GGSKKEEKEG 240 QSQRKSRRCW SPELHKRFLL ALQQLGGAHV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH 300 NRRPSPSIHS NNNPQAPQFV VVGGIWVPPP EYAAMAATTG SGEASGGANS NGIYAPIPTL 360 PPPFHDPSAS LKQKQRHKQL HSDDRGSNSG GGGHSNSHST SSSTDTATTS PNY

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MNGMINYHNN NHHDSSNYDE KMQRTQEYID SLEEERRKIL VFQRELPLCL ELVTQAIETC  60
KQQLSSGTTV TEYNFHGQSE CSEQTSTDGP VLEEFIPIKR ALSSDDDEQQ SRKPKKSNIS  120
NGNDKDNKSN NNDKAASSKK SDWLRSVQLW NQTPDPPQKE DSPKKVSVVE VKRNGSSGGA  180
FHPFKKEKSI GANAGKLDVP KSGDKTSIPA AEASSTEETG GTSGGGGGGN GGSKKEEKEG  240
QSQRKSRRCW SPELHKRFLL ALQQLGGAHV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH  300
NRRPSPSIHS NNNPQAPQFV VVGGIWVPPP EYAAMAATTG SGEASGGANS NGIYAPIPTL  360
PPPFHDPSAS LKQKQRHKQL HSDDRGSNSG GGGHSNSHST SSSTDTATTS PNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	3e-85	G2-like family protein