PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027095530.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 498aa MW: 55539.1 Da PI: 7.0899

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027095530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.6	1.3e-41	178	254	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ k+yh+rh+vC+vh+k+++v+++g+e+rfCqqCsrfh l+efD++krsCr+rLa+hnerrrk+q XP_027095530.1 178 VCQVHGCNKDLSSSKDYHKRHRVCDVHTKTAKVIINGIEKRFCQQCSRFHLLTEFDDGKRSCRKRLAGHNERRRKPQ 254 6**************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MESLSYYLEP RGPPISEDIG LPVDLLARNK NHVKDWDHKA LSDFYKNMPS FDRETVDNME 60 VLETDFSNRT EKLLFANPGL GSSTDKTNDD STNVIASTSM VNFDPFLWEG CASKISAAAA 120 ETRTQKESKF DPKLERQTDS READSLSCSK ENLVSSLVED SLPAKRARTT NLHSQFPVCQ 180 VHGCNKDLSS SKDYHKRHRV CDVHTKTAKV IINGIEKRFC QQCSRFHLLT EFDDGKRSCR 240 KRLAGHNERR RKPQLGAHLG SEFLEMTLLK RTSFLSPETF PAGFFYQERF EKDNHGRHFK 300 YVELPIDNSQ SAVALMNGQS GRVPIADPHI IQKQQSPGTC IDTAVAVELS VIRDSSSALS 360 LLSTQSQNTS SGAAGISMAL PPVNGVRHHA YESTKQNSAK NLGINTAKGS ASSGYSCGTI 420 DEEGMVRVRD GSMPVSFRVQ REGTFQVSDY RHANCSPSLE VGTLDLLQLS THLKRVEQQR 480 NFLQVEEENE TFCCSSNL

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MESLSYYLEP RGPPISEDIG LPVDLLARNK NHVKDWDHKA LSDFYKNMPS FDRETVDNME  60
VLETDFSNRT EKLLFANPGL GSSTDKTNDD STNVIASTSM VNFDPFLWEG CASKISAAAA  120
ETRTQKESKF DPKLERQTDS READSLSCSK ENLVSSLVED SLPAKRARTT NLHSQFPVCQ  180
VHGCNKDLSS SKDYHKRHRV CDVHTKTAKV IINGIEKRFC QQCSRFHLLT EFDDGKRSCR  240
KRLAGHNERR RKPQLGAHLG SEFLEMTLLK RTSFLSPETF PAGFFYQERF EKDNHGRHFK  300
YVELPIDNSQ SAVALMNGQS GRVPIADPHI IQKQQSPGTC IDTAVAVELS VIRDSSSALS  360
LLSTQSQNTS SGAAGISMAL PPVNGVRHHA YESTKQNSAK NLGINTAKGS ASSGYSCGTI  420
DEEGMVRVRD GSMPVSFRVQ REGTFQVSDY RHANCSPSLE VGTLDLLQLS THLKRVEQQR  480
NFLQVEEENE TFCCSSNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-51	SBP family protein