PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027095440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 285aa MW: 32140.9 Da PI: 6.727 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.2 | 3.2e-06 | 122 | 141 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ XP_027095440.1 122 FSCPVCNKTFNRYNNMQMHM 141 89*****************9 PP | |||||||
2 | zf-C2H2 | 16.7 | 2.1e-05 | 207 | 229 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F + + ++H +++ XP_027095440.1 207 FQCRKCGKPFAVRGDWRTHEKNC 229 89*****************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence |
MQRIHCCSNI SSGETDEIGS LEADDQDDDS LTLLSLAPPG QNNTSKNLLD CSFEYSSCQL 60 PQDNYQQCPR TSAENGVTVA LHIGLPTSEA SSTSHAHNFG VLPEGQYWIP TPAQILVGPT 120 QFSCPVCNKT FNRYNNMQMH MWGHGSQYRK GPESLRGTKP ASSMLKLPCY CCAEGCKNNI 180 DHPRSRPLKD FRTLQTHYKR KHGTKPFQCR KCGKPFAVRG DWRTHEKNCG KLWFCICGSD 240 FKHKRSLKDH IRAFGDGHAA HSQDLRGIEE LVELEEDDEE EEDNY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-116 | C2H2 family protein |