PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027095370.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 489aa MW: 54322 Da PI: 5.7306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027095370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.1e-13	343	389	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_027095370.1 343 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 389 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MGEKFWLIEE DKALVESVLG AEAVQFFVWL ASSNILSEFA APAGDVGVQD GLSKVVEGSD 60 WTYAIYWQVS TSKSGKSALI WGDGHCRDPR GTEKMDGNDY RDQRFAGGDR RKQALQKIHA 120 CFGGAEDDNV AAKLDSVSEL EMFYLTSMYY AFPFDKPSTP SQAFNTSRTI WVSDPRSCSE 180 NYQSRANLAK SARIETVVFV PFKSGVVEIG SGKSLSEDQN VVQMVKTSIT PNVVHPKTAP 240 KIFGQELSLG GGKSGPISIS FSPKVEDDSL FVSDSYELQA LAGYGPSNGY RSDDGEVKLF 300 PQRNQGILSN LEQAKDDSLM LSDDRRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY 360 ALRAVVPNIS KMDKASLLGD AIAYITDLQK KIRIMEAGRE MVNDRQKQPA MTDIDLQERH 420 EDAVVQVSCP LDVHPVSRVI KAMREHQIVA QESDVSLTEN GEVVHTFSIR TQGGDAEHLK 480 EKLTTALFN

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MGEKFWLIEE DKALVESVLG AEAVQFFVWL ASSNILSEFA APAGDVGVQD GLSKVVEGSD  60
WTYAIYWQVS TSKSGKSALI WGDGHCRDPR GTEKMDGNDY RDQRFAGGDR RKQALQKIHA  120
CFGGAEDDNV AAKLDSVSEL EMFYLTSMYY AFPFDKPSTP SQAFNTSRTI WVSDPRSCSE  180
NYQSRANLAK SARIETVVFV PFKSGVVEIG SGKSLSEDQN VVQMVKTSIT PNVVHPKTAP  240
KIFGQELSLG GGKSGPISIS FSPKVEDDSL FVSDSYELQA LAGYGPSNGY RSDDGEVKLF  300
PQRNQGILSN LEQAKDDSLM LSDDRRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  360
ALRAVVPNIS KMDKASLLGD AIAYITDLQK KIRIMEAGRE MVNDRQKQPA MTDIDLQERH  420
EDAVVQVSCP LDVHPVSRVI KAMREHQIVA QESDVSLTEN GEVVHTFSIR TQGGDAEHLK  480
EKLTTALFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	325	333	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-149	bHLH family protein