PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027095196.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 254aa    MW: 27851.9 Da    PI: 7.9894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027095196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-104085454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +h  +Er RR+riN+ +++Lr+l P++     +K +K  +L ++v+Y+k+L
  XP_027095196.1 40 KHALAERYRRKRINNHLNTLRKLFPNL-----PKSDKPRVLMETVRYLKEL 85
                    7999**********************8.....6****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MLQVQGCYGL QYTKKDGAGV LSSGSGLKTP EKNPQAAANK HALAERYRRK RINNHLNTLR  60
KLFPNLPKSD KPRVLMETVR YLKELRKKVA DHVEMNKDGQ EECCIGGKRS CSLFLPGEKD  120
EVSVSYYSEG EGGDHGVDQG ELLMVKATIC CEDRPRLNAD LMEAVKSVEG RVVKAEMGTI  180
GGRTKAVLVV QWCQQSLHCG GGGGGEEEEE EEEVGTVGSL RKALRAVVEN RALTPLLLLG  240
PEVLISSWTN RFGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.18e-26bHLH family protein