PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027094902.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 481aa MW: 53729.8 Da PI: 6.9391

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027094902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.2	7.9e-07	275	296	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_027094902.1 275 FCTICGKGFKRDANLRMHMRGH 296 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MMDPDERLRT NPWTKSSSSA SDALRQLSPD NQSFTNFSSQ QQKWEDSSSM DYRTRIEQQF 60 SEFTSPSENL SSAACGANNQ TKNHGHEDKR MRETSNSNNV QDWDPRGMLN NLSFLEQKIH 120 QLQDLVHLIV GRRCQAVGQS NELLVQQQQL ITADLTSIIV QLISTAGSLL PSVKHSLSSV 180 NPPVTQLGQF GGSITPPVTS FDNSGRVVHC DVKKVEDQPN EVDLIGNAGI EQNYVVEEHE 240 SKDEEDADEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY 300 KTPAALAKPN KESTSEPTLI KRYSCPFVGC KRNKDHKKFQ PLKTILCVKN HYKRTHCDKS 360 YTCSRCHTKK FSVIADLKTH EKHCGRDKWL CSCGTTFSRK DKLFGHIALF QGHTPAIPLD 420 ESKVSAGQSD AGQTNELINK VEQIDFSAQS NIPSGSGYQN VMDGSSEYHQ KTGRFSGSGN 480 L

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MMDPDERLRT NPWTKSSSSA SDALRQLSPD NQSFTNFSSQ QQKWEDSSSM DYRTRIEQQF  60
SEFTSPSENL SSAACGANNQ TKNHGHEDKR MRETSNSNNV QDWDPRGMLN NLSFLEQKIH  120
QLQDLVHLIV GRRCQAVGQS NELLVQQQQL ITADLTSIIV QLISTAGSLL PSVKHSLSSV  180
NPPVTQLGQF GGSITPPVTS FDNSGRVVHC DVKKVEDQPN EVDLIGNAGI EQNYVVEEHE  240
SKDEEDADEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY  300
KTPAALAKPN KESTSEPTLI KRYSCPFVGC KRNKDHKKFQ PLKTILCVKN HYKRTHCDKS  360
YTCSRCHTKK FSVIADLKTH EKHCGRDKWL CSCGTTFSRK DKLFGHIALF QGHTPAIPLD  420
ESKVSAGQSD AGQTNELINK VEQIDFSAQS NIPSGSGYQN VMDGSSEYHQ KTGRFSGSGN  480
L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein