PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027094752.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 443aa MW: 48037.4 Da PI: 8.5564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027094752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.3e-05	334	372	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_027094752.1 334 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 372 7788899*******998.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MESTSKIPHH HRHLQQQHPL QGHQLVGSSS TSTSTTTLGA SGFGAALSSH AWTPNTNLNS 60 AGFGSAANTA ILNSRNPRLE NDILVSSLNG SMTQDFSFSW ANGSRGNNFT NQSSHDLQLE 120 MIKREFSESY SNFSEMISSP SSSVEDVQLP IQATDYRRSE YREINDPNVK LLLRSLSSGD 180 RNNDFHRSCP GELYCSTSSS SSLGATPKRG TFSQIYPTIN VSEINQTSLA NSSSFHMNSQ 240 ALDLVNSARF SGIFCLPMVD QLGLSKNGSL SYGYDYLSQS IPMPISEPSN ITPLSYGVTE 300 TKRSDISLEP KVPQAAPKRS RSESRASCPP FKVRKEKLGD RIAALQQLVA PFGKTDTASV 360 LMEAIGYIKF LQNQVETLSV PYLKSSRNKS SRTVHGGAVE NGGEERKRDL RSRGLCLVPM 420 SCLSYVADGG GGVWPPPSFG GGT

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MESTSKIPHH HRHLQQQHPL QGHQLVGSSS TSTSTTTLGA SGFGAALSSH AWTPNTNLNS  60
AGFGSAANTA ILNSRNPRLE NDILVSSLNG SMTQDFSFSW ANGSRGNNFT NQSSHDLQLE  120
MIKREFSESY SNFSEMISSP SSSVEDVQLP IQATDYRRSE YREINDPNVK LLLRSLSSGD  180
RNNDFHRSCP GELYCSTSSS SSLGATPKRG TFSQIYPTIN VSEINQTSLA NSSSFHMNSQ  240
ALDLVNSARF SGIFCLPMVD QLGLSKNGSL SYGYDYLSQS IPMPISEPSN ITPLSYGVTE  300
TKRSDISLEP KVPQAAPKRS RSESRASCPP FKVRKEKLGD RIAALQQLVA PFGKTDTASV  360
LMEAIGYIKF LQNQVETLSV PYLKSSRNKS SRTVHGGAVE NGGEERKRDL RSRGLCLVPM  420
SCLSYVADGG GGVWPPPSFG GGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-69	bHLH family protein