PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027094718.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | TCP | ||||||||
Protein Properties | Length: 408aa MW: 42341.6 Da PI: 8.0279 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.6 | 6.4e-40 | 94 | 205 | 3 | 115 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s +ss+ ++++ +++a+ XP_027094718.1 94 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFSsLNVSLRSSGT--TISAPPSKSAP 186 6899****************************************************************99976677777666..44444444445 PP TCP 97 skksqksaasalnlakesr 115 sa+++l ++++ XP_027094718.1 187 LFLHGGSATAMLGFHHQLG 205 5555555555666666444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence |
MEFMEPHSKN QANTSNTSAS DHHHAPQQQE PGGPGSGQAA PVGGHGPFMG SISMHSRNLL 60 SSSSTPSSTT TTPTTTTAPS TASNNNNNSS GNKVAKKPSK DRHTKVDGRG RRIRMPALCA 120 ARVFQLTREL GHKSDGETIE WLLHQAEPAI IAATGTGTIP ANFSSLNVSL RSSGTTISAP 180 PSKSAPLFLH GGSATAMLGF HHQLGNTGFA QDPDENYMKK RFREDTTGAT SPSAAKPERA 240 GVQDHEPGSE AKIGLAQHSG FIPAQAMWAV APAAAASVGS TFWMLPAGTT MSAAAGSGGG 300 GGGSQQDHQL WQYKAAPTAM QRIGGYDFSG GGRFTPVQLG SMVLQQSQPV QQLGLGVSET 360 NMGMLASLNA YSGGGGSRVD LGMNLEQHHH QSQPQGSDSG DENPKDSQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 6e-65 | TCP family protein |