PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027094718.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family TCP
Protein Properties Length: 408aa    MW: 42341.6 Da    PI: 8.0279
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027094718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.66.4e-40942053115
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 
                     ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++  ++s +ss+   ++++  +++a+
  XP_027094718.1  94 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFSsLNVSLRSSGT--TISAPPSKSAP 186
                     6899****************************************************************99976677777666..44444444445 PP

             TCP  97 skksqksaasalnlakesr 115
                           sa+++l ++++  
  XP_027094718.1 187 LFLHGGSATAMLGFHHQLG 205
                     5555555555666666444 PP

Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MEFMEPHSKN QANTSNTSAS DHHHAPQQQE PGGPGSGQAA PVGGHGPFMG SISMHSRNLL  60
SSSSTPSSTT TTPTTTTAPS TASNNNNNSS GNKVAKKPSK DRHTKVDGRG RRIRMPALCA  120
ARVFQLTREL GHKSDGETIE WLLHQAEPAI IAATGTGTIP ANFSSLNVSL RSSGTTISAP  180
PSKSAPLFLH GGSATAMLGF HHQLGNTGFA QDPDENYMKK RFREDTTGAT SPSAAKPERA  240
GVQDHEPGSE AKIGLAQHSG FIPAQAMWAV APAAAASVGS TFWMLPAGTT MSAAAGSGGG  300
GGGSQQDHQL WQYKAAPTAM QRIGGYDFSG GGRFTPVQLG SMVLQQSQPV QQLGLGVSET  360
NMGMLASLNA YSGGGGSRVD LGMNLEQHHH QSQPQGSDSG DENPKDSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.16e-65TCP family protein