PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027094646.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 610aa MW: 65155.3 Da PI: 8.161

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027094646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	230	274	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_027094646.1 230 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 274 79****************************************985 PP
2	QLQ	61.1	3.1e-21	162	198	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+P+P++Ll +i+k XP_027094646.1 162 GPFTPSQWMELEHQALIYKYINANMPIPSYLLTPIRK 198 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MDFGVVSLDN GGGLMCSETT GFASSITLPT TATTTSDAET KQKWYGSGFL KQERSAGTTT 60 AAEDDLRDLK VAKISPDDFS ASKAMLFQQR TPLLRSNSSC SNLFPEGSGQ QQMLSFSSPN 120 PQSVTLPYYH HPSSVVYSRT TGYGSGGLNA GNMHGVPSGV RGPFTPSQWM ELEHQALIYK 180 YINANMPIPS YLLTPIRKAL DSAGFSSFAG LRPSAFGWGA FHIGFSNSTD PEPGRCRRTD 240 GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVEGQPGHSV AGTTNNAAKL TPTSSASAAV 300 VPGGSASNGL GLLQTGANVQ CAASPQLDRT FLEKENLGGR IQDTTGLSMI SRRINLKDNQ 360 YPLPKPQNPY QQSSRGEFGL VCSDSLLNPL DRSSSLVNCS NYGTSEEVND HESKSRTGLR 420 QFMDDWPNNR SERSSVVSWP DIDLHSDRTQ LSISISMAAS DFMSSTSSPT NEKVASSPLR 480 LSREVEATQM GLGVGATVND RTHRQANWIP ISWESSMGGP LAEVLHSTNN GTSESKSASA 540 LNLMTEGWDG SPQLASSPTG VLQKAAFVSR SNSSTGSSPR AEASKAHEGG SLCSGGVLGS 600 TLVNPALPAL

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MDFGVVSLDN GGGLMCSETT GFASSITLPT TATTTSDAET KQKWYGSGFL KQERSAGTTT  60
AAEDDLRDLK VAKISPDDFS ASKAMLFQQR TPLLRSNSSC SNLFPEGSGQ QQMLSFSSPN  120
PQSVTLPYYH HPSSVVYSRT TGYGSGGLNA GNMHGVPSGV RGPFTPSQWM ELEHQALIYK  180
YINANMPIPS YLLTPIRKAL DSAGFSSFAG LRPSAFGWGA FHIGFSNSTD PEPGRCRRTD  240
GKKWRCSRDA VADQKYCERH MNRGRHRSRK PVEGQPGHSV AGTTNNAAKL TPTSSASAAV  300
VPGGSASNGL GLLQTGANVQ CAASPQLDRT FLEKENLGGR IQDTTGLSMI SRRINLKDNQ  360
YPLPKPQNPY QQSSRGEFGL VCSDSLLNPL DRSSSLVNCS NYGTSEEVND HESKSRTGLR  420
QFMDDWPNNR SERSSVVSWP DIDLHSDRTQ LSISISMAAS DFMSSTSSPT NEKVASSPLR  480
LSREVEATQM GLGVGATVND RTHRQANWIP ISWESSMGGP LAEVLHSTNN GTSESKSASA  540
LNLMTEGWDG SPQLASSPTG VLQKAAFVSR SNSSTGSSPR AEASKAHEGG SLCSGGVLGS  600
TLVNPALPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-109	GRF family protein