PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027094529.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 376aa    MW: 41156 Da    PI: 5.2156
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027094529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.54.8e-15229265135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_027094529.1 229 CHHCGVGEnsTPAMRRGPTGPRTLCNACGLMWANKGT 265
                     *****99889************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MAGIPKAMKA RHYDDGGDDR VDDEDEEEEE EEEEDEDEDE DDDGGGDDVM SDVNEVHLNS  60
VGNHNHRHKQ QQQHQHHSHR AGGGGQVVAT RTSELTLAFE GEVYVFPAVT PQKVQAVLLL  120
LGGRDVPTSV PANDVIFDSN RKGVDDTLKR SNVSKRIASL VRFREKRKER CFDKKIRYSI  180
RKEVAQRMHR KNGQFASVKD GSGSSNWVSS KNNLQGDDKS HPETVLCRCH HCGVGENSTP  240
AMRRGPTGPR TLCNACGLMW ANKGTLRDLS KGGRTSSLHP VELGTPCDIK PLVLKGENSS  300
GNQYEHATPS KALTDGTDKY SANPDEGHLR GSGEDLANHV PVGIPASSGD LNEQDGLLDF  360
TSTSETEVDI PTNFGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151DTLKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-68GATA family protein