PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027094421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 895aa MW: 100756 Da PI: 8.755 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.3 | 1.3e-08 | 199 | 219 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+fa G C++G++C+F H+ XP_027094421.1 199 TCRNFAT-GNCRRGNQCRFLHP 219 5******.*************9 PP | |||||||
2 | zf-CCCH | 17.8 | 5.9e-06 | 280 | 299 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f+r G Ck G++C+F+H XP_027094421.1 280 CKDFMR-GKCKWGASCRFSHH 299 ******.*************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 895 aa Download sequence |
MDERGRKRKP LWDAEDENQR ISCSGKEYYS TYDGGRSNRF SSSKADNSSS MPKDHAGWPS 60 WDTLEENTTG KKVEGVYKNE QDELEMRERV VSPGFDGWGH RKHSNSSDDS LSRSRRYLEG 120 GRNRSRDRGR NRSRSPSWSK GRDRSGVRSR SMSRSRSRSR NRNRNSARGQ TRSRSPFHGH 180 RHDLQGWNDS SGSGRSSQTC RNFATGNCRR GNQCRFLHPD RMDRDYLEND FVERSRSRPD 240 RGHALAYGEG RGRQSWDKGS DSNHQEDDSF RSKSRGTICC KDFMRGKCKW GASCRFSHHV 300 DSGDNNGKDT RIALFERDRE HRTNESRKPL CKYFLAGKCH RDNCWFSHDG PIDSNHESRP 360 RDAGGRQSLV DKNDQWKGAT WDQGEPELKA VEGSRWSETV VPNRKIADAP LERRDNKWAH 420 ERSLRSPELK EKASEGNNYL STQDWSEDNG GDAGAIKSVV VESSYDRQEY PLISKGNLDL 480 VYTGSHAPNI TKEPSSQHLS EASLHAGLAE KSDILHHPTV AEDNIVNASS FDGFGQLKDN 540 RNTNNPEFMP GQSLNQNVIG NLSLNHPLVS NDQRDNLFFP HPSNVRNVDL NGSGQGLSST 600 LIIQNHAGSH QKEAAKTPEI QEFGAPRSFY NNASNNQVPQ NLLSPAAASP MHKFVAEQTQ 660 THLHAALNHL TSTALVSALE TAMQIQPNTD VRSPVQLDPL GDGRGKLGNV NQTSGEVPYS 720 YEQKNGIPFE EFSPMSGDNP QFGNTLISNI SNVQCHESPE SKQQEAPAAS EVKDNNTESV 780 VECQKGQEDL HKENGGEHVK VGNGNNNKDD KDMRLFKNAL VDFVKETLKP TWKEGRMSRE 840 VHKTIVKKVV DKVTSTMQDH IPKTQGKTDQ YLSHSKPKIT KLVQAYVERH LKTDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 132 | RNRSRDRGRNR |
2 | 124 | 134 | RNRSRDRGRNR |
3 | 154 | 164 | RNRSRDRGRNR |
4 | 154 | 162 | RSRSRSRNR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 7e-11 | C3H family protein |