PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027094420.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 895aa MW: 100756 Da PI: 8.755

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027094420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.3	1.3e-08	199	219	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+fa G C++G++C+F H+ XP_027094420.1 199 TCRNFAT-GNCRRGNQCRFLHP 219 5****.***********9 PP
2	zf-CCCH	17.8	5.9e-06	280	299	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f+r G Ck G++C+F+H XP_027094420.1 280 CKDFMR-GKCKWGASCRFSHH 299 ****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence
MDERGRKRKP LWDAEDENQR ISCSGKEYYS TYDGGRSNRF SSSKADNSSS MPKDHAGWPS 60 WDTLEENTTG KKVEGVYKNE QDELEMRERV VSPGFDGWGH RKHSNSSDDS LSRSRRYLEG 120 GRNRSRDRGR NRSRSPSWSK GRDRSGVRSR SMSRSRSRSR NRNRNSARGQ TRSRSPFHGH 180 RHDLQGWNDS SGSGRSSQTC RNFATGNCRR GNQCRFLHPD RMDRDYLEND FVERSRSRPD 240 RGHALAYGEG RGRQSWDKGS DSNHQEDDSF RSKSRGTICC KDFMRGKCKW GASCRFSHHV 300 DSGDNNGKDT RIALFERDRE HRTNESRKPL CKYFLAGKCH RDNCWFSHDG PIDSNHESRP 360 RDAGGRQSLV DKNDQWKGAT WDQGEPELKA VEGSRWSETV VPNRKIADAP LERRDNKWAH 420 ERSLRSPELK EKASEGNNYL STQDWSEDNG GDAGAIKSVV VESSYDRQEY PLISKGNLDL 480 VYTGSHAPNI TKEPSSQHLS EASLHAGLAE KSDILHHPTV AEDNIVNASS FDGFGQLKDN 540 RNTNNPEFMP GQSLNQNVIG NLSLNHPLVS NDQRDNLFFP HPSNVRNVDL NGSGQGLSST 600 LIIQNHAGSH QKEAAKTPEI QEFGAPRSFY NNASNNQVPQ NLLSPAAASP MHKFVAEQTQ 660 THLHAALNHL TSTALVSALE TAMQIQPNTD VRSPVQLDPL GDGRGKLGNV NQTSGEVPYS 720 YEQKNGIPFE EFSPMSGDNP QFGNTLISNI SNVQCHESPE SKQQEAPAAS EVKDNNTESV 780 VECQKGQEDL HKENGGEHVK VGNGNNNKDD KDMRLFKNAL VDFVKETLKP TWKEGRMSRE 840 VHKTIVKKVV DKVTSTMQDH IPKTQGKTDQ YLSHSKPKIT KLVQAYVERH LKTDS

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence

MDERGRKRKP LWDAEDENQR ISCSGKEYYS TYDGGRSNRF SSSKADNSSS MPKDHAGWPS  60
WDTLEENTTG KKVEGVYKNE QDELEMRERV VSPGFDGWGH RKHSNSSDDS LSRSRRYLEG  120
GRNRSRDRGR NRSRSPSWSK GRDRSGVRSR SMSRSRSRSR NRNRNSARGQ TRSRSPFHGH  180
RHDLQGWNDS SGSGRSSQTC RNFATGNCRR GNQCRFLHPD RMDRDYLEND FVERSRSRPD  240
RGHALAYGEG RGRQSWDKGS DSNHQEDDSF RSKSRGTICC KDFMRGKCKW GASCRFSHHV  300
DSGDNNGKDT RIALFERDRE HRTNESRKPL CKYFLAGKCH RDNCWFSHDG PIDSNHESRP  360
RDAGGRQSLV DKNDQWKGAT WDQGEPELKA VEGSRWSETV VPNRKIADAP LERRDNKWAH  420
ERSLRSPELK EKASEGNNYL STQDWSEDNG GDAGAIKSVV VESSYDRQEY PLISKGNLDL  480
VYTGSHAPNI TKEPSSQHLS EASLHAGLAE KSDILHHPTV AEDNIVNASS FDGFGQLKDN  540
RNTNNPEFMP GQSLNQNVIG NLSLNHPLVS NDQRDNLFFP HPSNVRNVDL NGSGQGLSST  600
LIIQNHAGSH QKEAAKTPEI QEFGAPRSFY NNASNNQVPQ NLLSPAAASP MHKFVAEQTQ  660
THLHAALNHL TSTALVSALE TAMQIQPNTD VRSPVQLDPL GDGRGKLGNV NQTSGEVPYS  720
YEQKNGIPFE EFSPMSGDNP QFGNTLISNI SNVQCHESPE SKQQEAPAAS EVKDNNTESV  780
VECQKGQEDL HKENGGEHVK VGNGNNNKDD KDMRLFKNAL VDFVKETLKP TWKEGRMSRE  840
VHKTIVKKVV DKVTSTMQDH IPKTQGKTDQ YLSHSKPKIT KLVQAYVERH LKTDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	132	RNRSRDRGRNR
2	124	134	RNRSRDRGRNR
3	154	164	RNRSRDRGRNR
4	154	162	RSRSRSRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-11	C3H family protein