PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027094391.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 485aa MW: 53414.4 Da PI: 4.9753

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027094391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.8e-34	273	327	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ XP_027094391.1 273 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 327 79****************************************************8 PP
2	Myb_DNA-binding	56.2	7.9e-18	275	326	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+av++lGg t+k + + m +g+t +++ks++qky+ XP_027094391.1 275 RMRWTPELHEAFVEAVNKLGGSeraTPKGVLKLMKvEGLTIYHVKSHLQKYR 326 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MTWNMPNSRF YLVGTPAMEA RPALSIQRSG TQQLNNCGPS GALSTSFPVL PSALEEKYPN 60 LPDSQQVPVE RQFKPCTSTV VSPISSSSGV VGHMFSSSSG LSTDLHFSSV SQQEKHSRQS 120 PFISQSTSCG TSMLFQQASH SGVLQSTASS QYTKENNDTS WCTDSLDFLD YPINQNNPLD 180 SCNTGEILPS EDLNKRNWQE WADQLISDDD ALTSSWNELI AETNVTDPGL KVPQQSTTFS 240 IQQPQASQQL PASSGETGPV VPPTPSGSGA PTKQRMRWTP ELHEAFVEAV NKLGGSERAT 300 PKGVLKLMKV EGLTIYHVKS HLQKYRTARY KPEPSEGSSE KKHALIDDLS SLDLKSGIEI 360 TEALRLQMEV QKRLHEQLEI QRNLQLRIEE QGRYLQMMFE KQCKSGLDLL KGSSSNLENP 420 LTDLTEPVLK SPDKSNLGVS EGNDHKMDEV GEKQKSPENE VPENLEATAT DTPNSPPPKR 480 AKLDE

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MTWNMPNSRF YLVGTPAMEA RPALSIQRSG TQQLNNCGPS GALSTSFPVL PSALEEKYPN  60
LPDSQQVPVE RQFKPCTSTV VSPISSSSGV VGHMFSSSSG LSTDLHFSSV SQQEKHSRQS  120
PFISQSTSCG TSMLFQQASH SGVLQSTASS QYTKENNDTS WCTDSLDFLD YPINQNNPLD  180
SCNTGEILPS EDLNKRNWQE WADQLISDDD ALTSSWNELI AETNVTDPGL KVPQQSTTFS  240
IQQPQASQQL PASSGETGPV VPPTPSGSGA PTKQRMRWTP ELHEAFVEAV NKLGGSERAT  300
PKGVLKLMKV EGLTIYHVKS HLQKYRTARY KPEPSEGSSE KKHALIDDLS SLDLKSGIEI  360
TEALRLQMEV QKRLHEQLEI QRNLQLRIEE QGRYLQMMFE KQCKSGLDLL KGSSSNLENP  420
LTDLTEPVLK SPDKSNLGVS EGNDHKMDEV GEKQKSPENE VPENLEATAT DTPNSPPPKR  480
AKLDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	3e-88	G2-like family protein