PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027094279.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 332aa    MW: 37001 Da    PI: 10.0253
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027094279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3942.1e-12013321301
       GAGA_bind   1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd+g+re  r+k+ + +   ++ +s+     +q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l+++e
  XP_027094279.1   1 MDDSGHREngRHKPpQGQwlmQHqPSM-----KQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRE 90 
                     999999877888773222223223444.....4************************************************************** PP

       GAGA_bind  89 nsla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                     ns++    s +p+g+q+ +g+k++++ qq +++ pq+++++++ r++ +++a pi+       e +k+++++r+k+pk+ +++kk    +ks kk
  XP_027094279.1  91 NSINsgnmSPCPPGCQITRGVKHMHHPQQhVHHqPQVNEPPYGSRDMPISDAIPISPGL---LEPAKSRRTKRTKDPKAVTSTKKA---SKSSKK 179
                     **99998889******************9644469********9999999999987643...333333333445555554444433...344555 PP

       GAGA_bind 178 vkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
                     vk+e++d +                             sk ++k++dl+ln+v++Dest+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yP
  XP_027094279.1 180 VKREGEDLNktmfgkshewkpgqevgsgtddlnrqlgvSKPDWKDQDLGLNQVAFDESTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYP 274
                     555555533356777788999************************************************************************** PP

       GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     LP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+
  XP_027094279.1 275 LPAVPNKRHARIGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 332
                     *********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MDDSGHRENG RHKPPQGQWL MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM  60
AILQRDSAIA ERNNAIMERD NAIATLQYRE NSINSGNMSP CPPGCQITRG VKHMHHPQQH  120
VHHQPQVNEP PYGSRDMPIS DAIPISPGLL EPAKSRRTKR TKDPKAVTST KKASKSSKKV  180
KREGEDLNKT MFGKSHEWKP GQEVGSGTDD LNRQLGVSKP DWKDQDLGLN QVAFDESTMP  240
VPVCSCTGVL RPCYKWGNGG WQSSCCTTNL SMYPLPAVPN KRHARIGGRK MSGSAFNKLL  300
SRLAAEGHDL SNPVDLKEHW AKHGTNRYIT IK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-138BBR-BPC family protein