PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027093922.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 517aa    MW: 56937.2 Da    PI: 6.0292
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027093922.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.75.4e-1011235071374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar...svselykalppsetsekn..........sseela 79 
                     lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +      ++y     ++ s ++          ++++la
  XP_027093922.1 123 LVHLLMAAAEALTGVNKSreLARVILVRLKELVSPNDgSNMERLAAYFTEALHGLLEGaggAAAGVYG----KHFSGHHgphlkddhhhQTDVLA 213
                     68***********85554449***********8887669*****************982222233332....22222222222334456999*** PP

            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAee 171
                     a++l++++sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR++gp  +lRiT++++  s   s ++++etg+rL+ fA++
  XP_027093922.1 214 AFQLLQDMSPYVKFGHFTANQAILEAVVHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPStHLRITALSRGGSArrSFTTIQETGRRLSAFAAS 308
                     *********************************************************66555*********77778899**************** PP

            GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyys 265
                     +g pf+f+    ++ e++++++L++ +gEal++n++l+l ++       ++ + ++L+  k+l+P+++++ve+ea    +e F+ +f+++l++ys
  XP_027093922.1 309 IGQPFSFHQCRLDSDEAFRPSSLKLVRGEALIINCMLHLPHFS---CRASESIASFLSGAKTLNPRLITLVEEEAGPiANEGFVGKFIDSLHHYS 400
                     *********9999**************************9997...444444779*******************9988***************** PP

            GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslv 359
                     a++dslea++p + ++r+ vEr++lg++i   +a   ++  +   + ++W e+l ++GF+p+++s  + +qakll+  ++ dgyrvee   + lv
  XP_027093922.1 401 AIYDSLEAGFPLQGRARVLVERVFLGPRIAGSIARIYRA--QGDAEGGSWGEWLASMGFRPISVSFANHCQAKLLVGLFN-DGYRVEELaCNKLV 492
                     ***********************************9988..666669*********************************.******98479999 PP

            GRAS 360 lgWkdrpLvsvSaWr 374
                     lgWk+r+L+s+S+W+
  XP_027093922.1 493 LGWKSRRLLSASVWT 507
                     **************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    
MAVVFRNTMM DVDFPCYSTT TTTTATTTAT TTTTTTATSS DDNCCDWNDW SSVVDWDEIS  60
CDGDHMTKDD GFHDLLETMT DENVTVQHPS WSLPDRRSST VSPETVMMDS EDDGGEDFKG  120
LRLVHLLMAA AEALTGVNKS RELARVILVR LKELVSPNDG SNMERLAAYF TEALHGLLEG  180
AGGAAAGVYG KHFSGHHGPH LKDDHHHQTD VLAAFQLLQD MSPYVKFGHF TANQAILEAV  240
VHDRRVHIVD YDIMEGIQWA SLMQALVSRK DGPSTHLRIT ALSRGGSARR SFTTIQETGR  300
RLSAFAASIG QPFSFHQCRL DSDEAFRPSS LKLVRGEALI INCMLHLPHF SCRASESIAS  360
FLSGAKTLNP RLITLVEEEA GPIANEGFVG KFIDSLHHYS AIYDSLEAGF PLQGRARVLV  420
ERVFLGPRIA GSIARIYRAQ GDAEGGSWGE WLASMGFRPI SVSFANHCQA KLLVGLFNDG  480
YRVEELACNK LVLGWKSRRL LSASVWTPPD NDMQVKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-160GRAS family protein