PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027093922.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 517aa MW: 56937.2 Da PI: 6.0292 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 329.7 | 5.4e-101 | 123 | 507 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar...svselykalppsetsekn..........sseela 79 lv+lL+++Aea++ +++ la+ +L rl+el+sp++ ++m+RlaayfteAL+ l + ++y ++ s ++ ++++la XP_027093922.1 123 LVHLLMAAAEALTGVNKSreLARVILVRLKELVSPNDgSNMERLAAYFTEALHGLLEGaggAAAGVYG----KHFSGHHgphlkddhhhQTDVLA 213 68***********85554449***********8887669*****************982222233332....22222222222334456999*** PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAee 171 a++l++++sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR++gp +lRiT++++ s s ++++etg+rL+ fA++ XP_027093922.1 214 AFQLLQDMSPYVKFGHFTANQAILEAVVHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPStHLRITALSRGGSArrSFTTIQETGRRLSAFAAS 308 *********************************************************66555*********77778899**************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyys 265 +g pf+f+ ++ e++++++L++ +gEal++n++l+l ++ ++ + ++L+ k+l+P+++++ve+ea +e F+ +f+++l++ys XP_027093922.1 309 IGQPFSFHQCRLDSDEAFRPSSLKLVRGEALIINCMLHLPHFS---CRASESIASFLSGAKTLNPRLITLVEEEAGPiANEGFVGKFIDSLHHYS 400 *********9999**************************9997...444444779*******************9988***************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslv 359 a++dslea++p + ++r+ vEr++lg++i +a ++ + + ++W e+l ++GF+p+++s + +qakll+ ++ dgyrvee + lv XP_027093922.1 401 AIYDSLEAGFPLQGRARVLVERVFLGPRIAGSIARIYRA--QGDAEGGSWGEWLASMGFRPISVSFANHCQAKLLVGLFN-DGYRVEELaCNKLV 492 ***********************************9988..666669*********************************.******98479999 PP GRAS 360 lgWkdrpLvsvSaWr 374 lgWk+r+L+s+S+W+ XP_027093922.1 493 LGWKSRRLLSASVWT 507 **************6 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 517 aa Download sequence |
MAVVFRNTMM DVDFPCYSTT TTTTATTTAT TTTTTTATSS DDNCCDWNDW SSVVDWDEIS 60 CDGDHMTKDD GFHDLLETMT DENVTVQHPS WSLPDRRSST VSPETVMMDS EDDGGEDFKG 120 LRLVHLLMAA AEALTGVNKS RELARVILVR LKELVSPNDG SNMERLAAYF TEALHGLLEG 180 AGGAAAGVYG KHFSGHHGPH LKDDHHHQTD VLAAFQLLQD MSPYVKFGHF TANQAILEAV 240 VHDRRVHIVD YDIMEGIQWA SLMQALVSRK DGPSTHLRIT ALSRGGSARR SFTTIQETGR 300 RLSAFAASIG QPFSFHQCRL DSDEAFRPSS LKLVRGEALI INCMLHLPHF SCRASESIAS 360 FLSGAKTLNP RLITLVEEEA GPIANEGFVG KFIDSLHHYS AIYDSLEAGF PLQGRARVLV 420 ERVFLGPRIA GSIARIYRAQ GDAEGGSWGE WLASMGFRPI SVSFANHCQA KLLVGLFNDG 480 YRVEELACNK LVLGWKSRRL LSASVWTPPD NDMQVKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-160 | GRAS family protein |